Analysis of interatomic Contacts of Structural Units in PDB entry:
7KSP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7KSP entry

There are 4 chains in PDB entry 7KSP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 159PHE 380
B
 LEU 159PHE 380
C
 G 1 G 22
D
 C 1 C 22
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 7KSP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
207 230Right-handed alpha
Helix 2
AA2
A
253 272Right-handed alpha
Helix 3
AA3
A
273 284Right-handed alpha
Helix 4
AA4
A
357 365Right-handed alpha
Helix 5
AA5
A
365 380Right-handed alpha
Helix 6
AA6
B
208 229Right-handed alpha
Helix 7
AA7
B
253 272Right-handed alpha
Helix 8
AA8
B
273 284Right-handed alpha
Helix 9
AA9
B
355 380Right-handed alpha
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There are 11 sheets in PDB entry 7KSP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 161first strand
Strand 2
A
180 181parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 176first strand
Strand 2
A
288 293parallel
Strand 3
A
302 309anti-parallel
Strand 4
A
233 236anti-parallel
Strand 5
A
194 197parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 176first strand
Strand 2
A
288 293parallel
Strand 3
A
302 309anti-parallel
Strand 4
A
250 251anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 240first strand
Strand 2
A
246 247anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 327first strand
Strand 2
A
334 335anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
342 344first strand
Strand 2
A
349 351anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 161first strand
Strand 2
B
180 181parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 197first strand
Strand 2
B
233 236parallel
Strand 3
B
302 309anti-parallel
Strand 4
B
250 251anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 197first strand
Strand 2
B
233 236parallel
Strand 3
B
302 309anti-parallel
Strand 4
B
288 292anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
326 327first strand
Strand 2
B
334 335anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
342 344first strand
Strand 2
B
349 351anti-parallel
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