Analysis of interatomic Contacts of Structural Units in PDB entry:
7KTR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7KTR entry

There are 11 chains in PDB entry 7KTR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	UNK 341	LEU 3848
B	MET 1	GLU 585
C	MET 1	SER 428
D	UNK 33	GLU 264
E	LYS 10	ILE 133
F	GLU 5	LEU 134
G	THR 59	LYS 161
H	THR 114	THR 218
I	SER 23	CYS 317
J	SER 104	GLY 331
N	LEU 507	LEU 559

There are254 helices in PDB entry 7KTR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	346	350	Right-handed 310
Helix 2	AA2	A	354	358	Right-handed 310
Helix 3	AA3	A	370	386	Right-handed alpha
Helix 4	AA4	A	391	407	Right-handed alpha
Helix 5	AA5	A	412	435	Right-handed alpha
Helix 6	AA6	A	436	439	Right-handed 310
Helix 7	AA7	A	441	470	Right-handed alpha
Helix 8	AA8	A	535	565	Right-handed alpha
Helix 9	AA9	A	581	599	Right-handed alpha
Helix 10	AB1	A	600	602	Right-handed 310
Helix 11	AB2	A	622	624	Right-handed 310
Helix 12	AB3	A	625	639	Right-handed alpha
Helix 13	AB4	A	642	654	Right-handed alpha
Helix 14	AB5	A	655	664	Right-handed alpha
Helix 15	AB6	A	667	677	Right-handed alpha
Helix 16	AB7	A	680	695	Right-handed alpha
Helix 17	AB8	A	702	723	Right-handed alpha
Helix 18	AB9	A	723	732	Right-handed alpha
Helix 19	AC1	A	734	747	Right-handed alpha
Helix 20	AC2	A	752	768	Right-handed alpha
Helix 21	AC3	A	772	779	Right-handed alpha
Helix 22	AC4	A	781	795	Right-handed alpha
Helix 23	AC5	A	798	811	Right-handed alpha
Helix 24	AC6	A	819	825	Right-handed 310
Helix 25	AC7	A	826	835	Right-handed alpha
Helix 26	AC8	A	837	855	Right-handed alpha
Helix 27	AC9	A	856	865	Right-handed alpha
Helix 28	AD1	A	867	879	Right-handed alpha
Helix 29	AD2	A	883	898	Right-handed alpha
Helix 30	AD3	A	899	903	Right-handed 310
Helix 31	AD4	A	938	951	Right-handed alpha
Helix 32	AD5	A	955	973	Right-handed alpha
Helix 33	AD6	A	979	988	Right-handed alpha
Helix 34	AD7	A	990	995	Right-handed alpha
Helix 35	AD8	A	1003	1007	Right-handed 310
Helix 36	AD9	A	1011	1029	Right-handed alpha
Helix 37	AE1	A	1033	1057	Right-handed alpha
Helix 38	AE2	A	1062	1066	Right-handed 310
Helix 39	AE3	A	1072	1076	Right-handed 310
Helix 40	AE4	A	1089	1101	Right-handed alpha
Helix 41	AE5	A	1105	1126	Right-handed alpha
Helix 42	AE6	A	1127	1132	Right-handed alpha
Helix 43	AE7	A	1134	1146	Right-handed alpha
Helix 44	AE8	A	1147	1150	Right-handed 310
Helix 45	AE9	A	1152	1170	Right-handed alpha
Helix 46	AF1	A	1171	1193	Right-handed alpha
Helix 47	AF2	A	1200	1218	Right-handed alpha
Helix 48	AF3	A	1226	1248	Right-handed alpha
Helix 49	AF4	A	1252	1271	Right-handed alpha
Helix 50	AF5	A	1273	1279	Right-handed alpha
Helix 51	AF6	A	1280	1285	Right-handed 310
Helix 52	AF7	A	1295	1299	Right-handed 310
Helix 53	AF8	A	1300	1315	Right-handed alpha
Helix 54	AF9	A	1328	1344	Right-handed alpha
Helix 55	AG1	A	1345	1351	Right-handed alpha
Helix 56	AG2	A	1361	1375	Right-handed alpha
Helix 57	AG3	A	1378	1380	Right-handed 310
Helix 58	AG4	A	1381	1394	Right-handed alpha
Helix 59	AG5	A	1397	1413	Right-handed alpha
Helix 60	AG6	A	1418	1431	Right-handed alpha
Helix 61	AG7	A	1440	1454	Right-handed alpha
Helix 62	AG8	A	1459	1484	Right-handed alpha
Helix 63	AG9	A	1489	1505	Right-handed alpha
Helix 64	AH1	A	1512	1528	Right-handed alpha
Helix 65	AH2	A	1535	1544	Right-handed alpha
Helix 66	AH3	A	1546	1555	Right-handed alpha
Helix 67	AH4	A	1556	1561	Right-handed alpha
Helix 68	AH5	A	1562	1574	Right-handed alpha
Helix 69	AH6	A	1578	1587	Right-handed alpha
Helix 70	AH7	A	1589	1594	Right-handed alpha
Helix 71	AH8	A	1618	1635	Right-handed alpha
Helix 72	AH9	A	1637	1640	Right-handed 310
Helix 73	AI1	A	1641	1654	Right-handed alpha
Helix 74	AI2	A	1654	1663	Right-handed alpha
Helix 75	AI3	A	1672	1688	Right-handed alpha
Helix 76	AI4	A	1694	1699	Right-handed alpha
Helix 77	AI5	A	1711	1717	Right-handed alpha
Helix 78	AI6	A	1730	1745	Right-handed alpha
Helix 79	AI7	A	1755	1766	Right-handed alpha
Helix 80	AI8	A	1788	1799	Right-handed alpha
Helix 81	AI9	A	1807	1821	Right-handed alpha
Helix 82	AJ1	A	1839	1846	Right-handed alpha
Helix 83	AJ2	A	1961	1973	Right-handed alpha
Helix 84	AJ3	A	1985	2001	Right-handed alpha
Helix 85	AJ4	A	2078	2088	Right-handed alpha
Helix 86	AJ5	A	2103	2116	Right-handed alpha
Helix 87	AJ6	A	2122	2127	Right-handed 310
Helix 88	AJ7	A	2131	2139	Right-handed alpha
Helix 89	AJ8	A	2154	2162	Right-handed alpha
Helix 90	AJ9	A	2167	2175	Right-handed alpha
Helix 91	AK1	A	2176	2178	Right-handed 310
Helix 92	AK2	A	2194	2206	Right-handed alpha
Helix 93	AK3	A	2219	2237	Right-handed alpha
Helix 94	AK4	A	2250	2260	Right-handed alpha
Helix 95	AK5	A	2264	2268	Right-handed 310
Helix 96	AK6	A	2273	2286	Right-handed alpha
Helix 97	AK7	A	2301	2314	Right-handed alpha
Helix 98	AK8	A	2321	2340	Right-handed alpha
Helix 99	AK9	A	2342	2358	Right-handed alpha
Helix 100	AL1	A	2363	2367	Right-handed 310
Helix 101	AL2	A	2370	2389	Right-handed alpha
Helix 102	AL3	A	2392	2409	Right-handed alpha
Helix 103	AL4	A	2416	2420	Right-handed 310
Helix 104	AL5	A	2421	2431	Right-handed alpha
Helix 105	AL6	A	2433	2447	Right-handed alpha
Helix 106	AL7	A	2451	2461	Right-handed alpha
Helix 107	AL8	A	2464	2469	Right-handed 310
Helix 108	AL9	A	2473	2483	Right-handed alpha
Helix 109	AM1	A	2504	2510	Right-handed alpha
Helix 110	AM2	A	2511	2521	Right-handed alpha
Helix 111	AM3	A	2568	2585	Right-handed alpha
Helix 112	AM4	A	2588	2601	Right-handed alpha
Helix 113	AM5	A	2603	2622	Right-handed alpha
Helix 114	AM6	A	2623	2639	Right-handed alpha
Helix 115	AM7	A	2640	2649	Right-handed 310
Helix 116	AM8	A	2652	2662	Right-handed alpha
Helix 117	AM9	A	2671	2682	Right-handed alpha
Helix 118	AN1	A	2684	2697	Right-handed alpha
Helix 119	AN2	A	2709	2713	Right-handed 310
Helix 120	AN3	A	2723	2738	Right-handed alpha
Helix 121	AN4	A	2739	2751	Right-handed alpha
Helix 122	AN5	A	2753	2764	Right-handed alpha
Helix 123	AN6	A	2767	2789	Right-handed alpha
Helix 124	AN7	A	2792	2794	Right-handed 310
Helix 125	AN8	A	2795	2813	Right-handed alpha
Helix 126	AN9	A	2815	2824	Right-handed alpha
Helix 127	AO1	A	2830	2839	Right-handed alpha
Helix 128	AO2	A	2840	2842	Right-handed 310
Helix 129	AO3	A	2843	2855	Right-handed alpha
Helix 130	AO4	A	2859	2861	Right-handed 310
Helix 131	AO5	A	2862	2877	Right-handed alpha
Helix 132	AO6	A	2885	2902	Right-handed alpha
Helix 133	AO7	A	2909	2911	Right-handed 310
Helix 134	AO8	A	2912	2935	Right-handed alpha
Helix 135	AO9	A	2936	2940	Right-handed 310
Helix 136	AP1	A	2942	2959	Right-handed alpha
Helix 137	AP2	A	2966	2992	Right-handed alpha
Helix 138	AP3	A	2998	3023	Right-handed alpha
Helix 139	AP4	A	3024	3034	Right-handed alpha
Helix 140	AP5	A	3035	3038	Right-handed 310
Helix 141	AP6	A	3042	3061	Right-handed alpha
Helix 142	AP7	A	3065	3078	Right-handed alpha
Helix 143	AP8	A	3085	3103	Right-handed alpha
Helix 144	AP9	A	3105	3120	Right-handed alpha
Helix 145	AQ1	A	3123	3142	Right-handed alpha
Helix 146	AQ2	A	3143	3158	Right-handed alpha
Helix 147	AQ3	A	3166	3177	Right-handed alpha
Helix 148	AQ4	A	3178	3180	Right-handed 310
Helix 149	AQ5	A	3184	3194	Right-handed alpha
Helix 150	AQ6	A	3198	3204	Right-handed 310
Helix 151	AQ7	A	3205	3214	Right-handed alpha
Helix 152	AQ8	A	3217	3232	Right-handed alpha
Helix 153	AQ9	A	3232	3255	Right-handed alpha
Helix 154	AR1	A	3283	3300	Right-handed alpha
Helix 155	AR2	A	3300	3314	Right-handed alpha
Helix 156	AR3	A	3315	3318	Right-handed 310
Helix 157	AR4	A	3320	3344	Right-handed alpha
Helix 158	AR5	A	3353	3366	Right-handed alpha
Helix 159	AR6	A	3384	3397	Right-handed alpha
Helix 160	AR7	A	3399	3413	Right-handed alpha
Helix 161	AR8	A	3422	3442	Right-handed alpha
Helix 162	AR9	A	3451	3453	Right-handed 310
Helix 163	AS1	A	3454	3460	Right-handed alpha
Helix 164	AS2	A	3524	3542	Right-handed alpha
Helix 165	AS3	A	3543	3547	Right-handed 310
Helix 166	AS4	A	3550	3555	Right-handed alpha
Helix 167	AS5	A	3582	3594	Right-handed alpha
Helix 168	AS6	A	3598	3615	Right-handed alpha
Helix 169	AS7	A	3619	3634	Right-handed alpha
Helix 170	AS8	A	3638	3648	Right-handed alpha
Helix 171	AS9	A	3650	3675	Right-handed alpha
Helix 172	AT1	A	3681	3683	Right-handed 310
Helix 173	AT2	A	3721	3729	Right-handed alpha
Helix 174	AT3	A	3729	3735	Right-handed alpha
Helix 175	AT4	A	3735	3749	Right-handed alpha
Helix 176	AT5	A	3754	3779	Right-handed alpha
Helix 177	AT6	A	3786	3790	Right-handed 310
Helix 178	AT7	A	3792	3816	Right-handed alpha
Helix 179	AT8	A	3817	3821	Right-handed 310
Helix 180	AT9	A	3822	3832	Right-handed alpha
Helix 181	AU1	A	3833	3838	Right-handed alpha
Helix 182	AU2	A	3839	3840	Right-handed 310
Helix 183	AU3	A	3841	3845	Right-handed 310
Helix 184	AU4	B	5	20	Right-handed alpha
Helix 185	AU5	B	38	51	Right-handed alpha
Helix 186	AU6	B	68	84	Right-handed alpha
Helix 187	AU7	B	86	92	Right-handed alpha
Helix 188	AU8	B	95	110	Right-handed alpha
Helix 189	AU9	B	112	124	Right-handed alpha
Helix 190	AV1	B	133	142	Right-handed alpha
Helix 191	AV2	B	145	152	Right-handed alpha
Helix 192	AV3	B	153	161	Right-handed alpha
Helix 193	AV4	B	169	182	Right-handed alpha
Helix 194	AV5	B	184	194	Right-handed alpha
Helix 195	AV6	C	2	22	Right-handed alpha
Helix 196	AV7	C	35	50	Right-handed alpha
Helix 197	AV8	C	62	70	Right-handed alpha
Helix 198	AV9	C	109	117	Right-handed alpha
Helix 199	AW1	C	121	131	Right-handed alpha
Helix 200	AW2	C	169	181	Right-handed alpha
Helix 201	AW3	C	188	203	Right-handed alpha
Helix 202	AW4	C	213	227	Right-handed alpha
Helix 203	AW5	C	231	242	Right-handed alpha
Helix 204	AW6	C	242	252	Right-handed alpha
Helix 205	AW7	C	253	255	Right-handed 310
Helix 206	AW8	C	261	272	Right-handed alpha
Helix 207	AW9	C	307	311	Right-handed 310
Helix 208	AX1	C	398	418	Right-handed alpha
Helix 209	AX2	D	57	87	Right-handed alpha
Helix 210	AX3	D	112	117	Right-handed alpha
Helix 211	AX4	D	136	141	Right-handed alpha
Helix 212	AX5	D	150	170	Right-handed alpha
Helix 213	AX6	D	176	208	Right-handed alpha
Helix 214	AX7	D	214	223	Right-handed alpha
Helix 215	AX8	D	229	239	Right-handed alpha
Helix 216	AX9	D	239	262	Right-handed alpha
Helix 217	AY1	E	13	27	Right-handed alpha
Helix 218	AY2	E	34	61	Right-handed alpha
Helix 219	AY3	E	67	80	Right-handed alpha
Helix 220	AY4	E	88	101	Right-handed alpha
Helix 221	AY5	E	117	121	Right-handed 310
Helix 222	AY6	F	13	25	Right-handed alpha
Helix 223	AY7	F	29	57	Right-handed alpha
Helix 224	AY8	F	64	75	Right-handed alpha
Helix 225	AY9	F	109	114	Right-handed alpha
Helix 226	AZ1	G	62	71	Right-handed alpha
Helix 227	AZ2	G	77	106	Right-handed alpha
Helix 228	AZ3	G	112	123	Right-handed alpha
Helix 229	AZ4	G	145	161	Right-handed alpha
Helix 230	AZ5	H	118	124	Right-handed alpha
Helix 231	AZ6	H	131	142	Right-handed alpha
Helix 232	AZ7	H	148	178	Right-handed alpha
Helix 233	AZ8	H	196	206	Right-handed alpha
Helix 234	AZ9	I	26	36	Right-handed alpha
Helix 235	BA1	I	44	74	Right-handed alpha
Helix 236	BA2	I	79	87	Right-handed alpha
Helix 237	BA3	I	90	112	Right-handed alpha
Helix 238	BA4	I	131	145	Right-handed alpha
Helix 239	BA5	I	148	156	Right-handed alpha
Helix 240	BA6	I	175	179	Right-handed alpha
Helix 241	BA7	I	188	205	Right-handed alpha
Helix 242	BA8	I	214	244	Right-handed alpha
Helix 243	BA9	I	249	255	Right-handed alpha
Helix 244	BB1	I	256	258	Right-handed 310
Helix 245	BB2	I	282	294	Right-handed alpha
Helix 246	BB3	J	105	109	Right-handed 310
Helix 247	BB4	J	147	161	Right-handed alpha
Helix 248	BB5	J	170	193	Right-handed alpha
Helix 249	BB6	J	218	230	Right-handed alpha
Helix 250	BB7	J	249	265	Right-handed alpha
Helix 251	BB8	J	276	287	Right-handed alpha
Helix 252	BB9	J	293	306	Right-handed alpha
Helix 253	BC1	J	312	331	Right-handed alpha
Helix 254	BC2	N	540	558	Right-handed alpha

There are 22 sheets in PDB entry 7KTR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	604	606	first strand
Strand 2	A	612	614	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	922	926	first strand
Strand 2	A	933	937	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3447	3449	first strand
Strand 2	A	3491	3496	anti-parallel
Strand 3	A	3501	3509	anti-parallel
Strand 4	A	3485	3488	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3447	3449	first strand
Strand 2	A	3491	3496	anti-parallel
Strand 3	A	3501	3509	anti-parallel
Strand 4	A	3514	3520	anti-parallel
Strand 5	A	3570	3574	anti-parallel
Strand 6	A	3563	3567	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3579	3581	first strand
Strand 2	A	3685	3688	anti-parallel
Strand 3	A	3694	3696	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	168	first strand
Strand 2	B	195	200	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	566	569	first strand
Strand 2	B	576	582	anti-parallel
Strand 3	B	258	264	parallel
Strand 4	F	127	133	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	271	276	first strand
Strand 2	B	282	287	anti-parallel
Strand 3	B	292	296	anti-parallel
Strand 4	B	335	338	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	320	321	first strand
Strand 2	E	130	131	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	345	350	first strand
Strand 2	B	356	361	anti-parallel
Strand 3	B	366	370	anti-parallel
Strand 4	B	375	380	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	391	392	first strand
Strand 2	B	398	402	anti-parallel
Strand 3	B	408	412	anti-parallel
Strand 4	B	415	422	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	429	434	first strand
Strand 2	B	440	445	anti-parallel
Strand 3	B	450	454	anti-parallel
Strand 4	B	460	464	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	471	476	first strand
Strand 2	B	482	487	anti-parallel
Strand 3	B	492	496	anti-parallel
Strand 4	B	501	506	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	513	518	first strand
Strand 2	B	524	529	anti-parallel
Strand 3	B	533	538	anti-parallel
Strand 4	B	555	559	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	90	first strand
Strand 2	C	76	81	anti-parallel
Strand 3	C	140	147	parallel
Strand 4	C	136	137	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	90	first strand
Strand 2	C	76	81	anti-parallel
Strand 3	C	140	147	parallel
Strand 4	C	162	166	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	350	356	first strand
Strand 2	C	333	340	anti-parallel
Strand 3	C	422	427	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	363	365	first strand
Strand 2	C	394	396	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	106	108	first strand
Strand 2	D	173	175	anti-parallel
Strand 3	H	194	195	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	10	first strand
Strand 2	N	511	512	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	91	93	first strand
Strand 2	F	100	102	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	123	124	first strand
Strand 2	N	527	528	parallel
Strand 3	N	534	535	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7KTR

Analysis of interatomic Contacts of Structural Units in PDB entry:
7KTR