Analysis of interatomic Contacts of Structural Units in PDB entry:
7KUU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7KUU entry

There are 4 chains in PDB entry 7KUU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -2VAL 43
A
 THR 45ASN 210
B
 LEU 3VAL 44
B
 THR 46ASN 211
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 7KUU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 27Right-handed alpha
Helix 2
AA2
A
41 54Right-handed alpha
Helix 3
AA3
A
54 61Right-handed alpha
Helix 4
AA4
A
72 87Right-handed alpha
Helix 5
AA5
A
101 107Right-handed alpha
Helix 6
AA6
A
145 162Right-handed alpha
Helix 7
AA7
A
184 192Right-handed alpha
Helix 8
AA8
B
23 28Right-handed alpha
Helix 9
AA9
B
42 55Right-handed alpha
Helix 10
AB1
B
55 62Right-handed alpha
Helix 11
AB2
B
73 88Right-handed alpha
Helix 12
AB3
B
102 108Right-handed alpha
Helix 13
AB4
B
146 163Right-handed alpha
Helix 14
AB5
B
185 193Right-handed alpha
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There are 5 sheets in PDB entry 7KUU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 13first strand
Strand 2
A
20 21anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 97first strand
Strand 2
A
63 69parallel
Strand 3
A
30 35parallel
Strand 4
A
120 126anti-parallel
Strand 5
A
132 139anti-parallel
Strand 6
B
133 140anti-parallel
Strand 7
B
121 127anti-parallel
Strand 8
B
31 36anti-parallel
Strand 9
B
64 70parallel
Strand 10
B
96 98parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 165first strand
Strand 2
A
176 178anti-parallel
Strand 3
A
203 206anti-parallel
Strand 4
A
197 200anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 14first strand
Strand 2
B
21 22anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 166first strand
Strand 2
B
177 179anti-parallel
Strand 3
B
204 207anti-parallel
Strand 4
B
198 201anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il