Analysis of interatomic Contacts of Structural Units in PDB entry:
7KUX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7KUX entry

There are 17 chains in PDB entry 7KUX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 17	GLY 758
B	SER 3	GLY 734
1	GLU 50	PRO 241
2	ARG 65	LEU 267
3	ARG 103	LEU 320
4	ARG 65	LEU 267
C	ALA 2	TYR 81
D	PHE 70	LEU 211
E	ILE 66	SER 128
F	VAL 79	ARG 238
G	ALA 59	ASN 149
H	TYR 54	ARG 140
I	MET 1	GLU 34
J	MET 1	LEU 41
K	TYR 49	ALA 129
L	GLN 65	LYS 224
M	SER 2	GLN 31

There are130 helices in PDB entry 7KUX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	36	Right-handed alpha
Helix 2	AA2	A	43	47	Right-handed 310
Helix 3	AA3	A	51	60	Right-handed alpha
Helix 4	AA4	A	70	103	Right-handed alpha
Helix 5	AA5	A	105	112	Right-handed alpha
Helix 6	AA6	A	128	133	Right-handed 310
Helix 7	AA7	A	148	156	Right-handed alpha
Helix 8	AA8	A	160	188	Right-handed alpha
Helix 9	AA9	A	192	197	Right-handed alpha
Helix 10	AB1	A	198	208	Right-handed alpha
Helix 11	AB2	A	210	225	Right-handed alpha
Helix 12	AB3	A	225	235	Right-handed alpha
Helix 13	AB4	A	244	251	Right-handed alpha
Helix 14	AB5	A	251	257	Right-handed alpha
Helix 15	AB6	A	259	264	Right-handed 310
Helix 16	AB7	A	266	271	Right-handed alpha
Helix 17	AB8	A	273	278	Right-handed 310
Helix 18	AB9	A	295	314	Right-handed alpha
Helix 19	AC1	A	326	333	Right-handed alpha
Helix 20	AC2	A	345	353	Right-handed alpha
Helix 21	AC3	A	353	378	Right-handed alpha
Helix 22	AC4	A	388	421	Right-handed alpha
Helix 23	AC5	A	430	438	Right-handed alpha
Helix 24	AC6	A	438	470	Right-handed alpha
Helix 25	AC7	A	472	476	Right-handed 310
Helix 26	AC8	A	486	496	Right-handed alpha
Helix 27	AC9	A	512	516	Right-handed 310
Helix 28	AD1	A	535	562	Right-handed alpha
Helix 29	AD2	A	571	576	Right-handed alpha
Helix 30	AD3	A	593	624	Right-handed alpha
Helix 31	AD4	A	630	632	Right-handed 310
Helix 32	AD5	A	641	646	Right-handed alpha
Helix 33	AD6	A	648	655	Right-handed alpha
Helix 34	AD7	A	672	695	Right-handed alpha
Helix 35	AD8	A	696	714	Right-handed alpha
Helix 36	AD9	A	726	757	Right-handed alpha
Helix 37	AE1	B	9	14	Right-handed alpha
Helix 38	AE2	B	18	27	Right-handed alpha
Helix 39	AE3	B	30	34	Right-handed 310
Helix 40	AE4	B	38	72	Right-handed alpha
Helix 41	AE5	B	73	80	Right-handed alpha
Helix 42	AE6	B	97	104	Right-handed alpha
Helix 43	AE7	B	119	128	Right-handed alpha
Helix 44	AE8	B	131	156	Right-handed alpha
Helix 45	AE9	B	164	169	Right-handed alpha
Helix 46	AF1	B	170	181	Right-handed alpha
Helix 47	AF2	B	184	197	Right-handed alpha
Helix 48	AF3	B	197	203	Right-handed alpha
Helix 49	AF4	B	229	235	Right-handed 310
Helix 50	AF5	B	269	288	Right-handed alpha
Helix 51	AF6	B	300	308	Right-handed alpha
Helix 52	AF7	B	321	329	Right-handed alpha
Helix 53	AF8	B	329	351	Right-handed alpha
Helix 54	AF9	B	364	397	Right-handed alpha
Helix 55	AG1	B	406	414	Right-handed alpha
Helix 56	AG2	B	414	446	Right-handed alpha
Helix 57	AG3	B	448	452	Right-handed 310
Helix 58	AG4	B	457	468	Right-handed alpha
Helix 59	AG5	B	483	490	Right-handed alpha
Helix 60	AG6	B	493	502	Right-handed alpha
Helix 61	AG7	B	513	540	Right-handed alpha
Helix 62	AG8	B	550	554	Right-handed 310
Helix 63	AG9	B	571	602	Right-handed alpha
Helix 64	AH1	B	605	613	Right-handed alpha
Helix 65	AH2	B	615	622	Right-handed alpha
Helix 66	AH3	B	643	665	Right-handed alpha
Helix 67	AH4	B	667	685	Right-handed alpha
Helix 68	AH5	B	701	728	Right-handed alpha
Helix 69	AH6	1	79	99	Right-handed alpha
Helix 70	AH7	1	101	110	Right-handed alpha
Helix 71	AH8	1	140	161	Right-handed alpha
Helix 72	AH9	1	172	176	Right-handed 310
Helix 73	AI1	1	186	214	Right-handed alpha
Helix 74	AI2	1	218	229	Right-handed alpha
Helix 75	AI3	1	235	240	Right-handed alpha
Helix 76	AI4	2	96	130	Right-handed alpha
Helix 77	AI5	2	149	165	Right-handed alpha
Helix 78	AI6	2	165	174	Right-handed alpha
Helix 79	AI7	2	198	203	Right-handed alpha
Helix 80	AI8	2	212	244	Right-handed alpha
Helix 81	AI9	2	247	258	Right-handed alpha
Helix 82	AJ1	2	263	267	Right-handed 310
Helix 83	AJ2	3	111	115	Right-handed 310
Helix 84	AJ3	3	133	137	Right-handed 310
Helix 85	AJ4	3	145	164	Right-handed alpha
Helix 86	AJ5	3	165	173	Right-handed alpha
Helix 87	AJ6	3	201	215	Right-handed alpha
Helix 88	AJ7	3	216	226	Right-handed alpha
Helix 89	AJ8	3	264	296	Right-handed alpha
Helix 90	AJ9	3	299	310	Right-handed alpha
Helix 91	AK1	4	99	122	Right-handed alpha
Helix 92	AK2	4	122	131	Right-handed alpha
Helix 93	AK3	4	149	174	Right-handed alpha
Helix 94	AK4	4	211	243	Right-handed alpha
Helix 95	AK5	4	246	253	Right-handed alpha
Helix 96	AK6	C	15	20	Right-handed alpha
Helix 97	AK7	C	44	48	Right-handed 310
Helix 98	AK8	C	52	57	Right-handed alpha
Helix 99	AK9	D	92	98	Right-handed alpha
Helix 100	AL1	D	134	148	Right-handed alpha
Helix 101	AL2	D	197	202	Right-handed 310
Helix 102	AL3	E	121	123	Right-handed 310
Helix 103	AL4	F	88	107	Right-handed alpha
Helix 104	AL5	F	113	134	Right-handed alpha
Helix 105	AL6	F	160	187	Right-handed alpha
Helix 106	AL7	F	192	197	Right-handed alpha
Helix 107	AL8	F	199	208	Right-handed alpha
Helix 108	AL9	F	213	223	Right-handed alpha
Helix 109	AM1	F	229	233	Right-handed 310
Helix 110	AM2	G	60	79	Right-handed alpha
Helix 111	AM3	G	80	91	Right-handed alpha
Helix 112	AM4	G	101	105	Right-handed alpha
Helix 113	AM5	G	106	110	Right-handed 310
Helix 114	AM6	G	125	148	Right-handed alpha
Helix 115	AM7	H	79	90	Right-handed alpha
Helix 116	AM8	H	95	117	Right-handed alpha
Helix 117	AM9	H	136	140	Right-handed 310
Helix 118	AN1	I	6	16	Right-handed alpha
Helix 119	AN2	I	16	31	Right-handed alpha
Helix 120	AN3	J	3	9	Right-handed alpha
Helix 121	AN4	J	10	33	Right-handed alpha
Helix 122	AN5	K	52	71	Right-handed alpha
Helix 123	AN6	K	103	129	Right-handed alpha
Helix 124	AN7	L	71	73	Right-handed 310
Helix 125	AN8	L	88	93	Right-handed alpha
Helix 126	AN9	L	106	120	Right-handed alpha
Helix 127	AO1	L	121	126	Right-handed alpha
Helix 128	AO2	L	135	163	Right-handed alpha
Helix 129	AO3	L	190	216	Right-handed alpha
Helix 130	AO4	M	4	31	Right-handed alpha

There are 16 sheets in PDB entry 7KUX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	24	first strand
Strand 2	A	189	191	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	121	first strand
Strand 2	A	141	144	anti-parallel
Strand 3	A	134	135	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	522	523	first strand
Strand 2	A	526	527	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	626	628	first strand
Strand 2	A	634	636	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	90	first strand
Strand 2	B	113	115	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	454	455	first strand
Strand 2	F	146	148	parallel
Strand 3	F	139	140	anti-parallel
Strand 4	F	83	84	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	130	131	first strand
Strand 2	1	134	135	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	108	109	first strand
Strand 2	K	94	95	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	65	68	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	38	41	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	132	first strand
Strand 2	D	100	106	anti-parallel
Strand 3	D	153	158	anti-parallel
Strand 4	D	164	168	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	111	114	first strand
Strand 2	D	120	123	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	117	120	first strand
Strand 2	E	103	106	anti-parallel
Strand 3	E	87	93	anti-parallel
Strand 4	E	73	76	anti-parallel
Strand 5	E	125	127	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	95	96	first strand
Strand 2	G	99	100	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	79	81	first strand
Strand 2	K	87	89	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	68	69	first strand
Strand 2	L	79	80	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7KUX

Analysis of interatomic Contacts of Structural Units in PDB entry:
7KUX