Analysis of interatomic Contacts of Structural Units in PDB entry:
7KUY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7KUY entry

There are 5 chains in PDB entry 7KUY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 15	HIS 419
B	LEU 15	HIS 419
C	LEU 15	HIS 419
D	LEU 15	HIS 419
E	GLN 21	LEU 475

There are 42 helices in PDB entry 7KUY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	25	Right-handed alpha
Helix 2	AA2	A	78	81	Right-handed 310
Helix 3	AA3	A	227	235	Right-handed alpha
Helix 4	AA4	A	235	250	Right-handed alpha
Helix 5	AA5	A	255	281	Right-handed alpha
Helix 6	AA6	A	288	315	Right-handed alpha
Helix 7	AA7	A	384	416	Right-handed alpha
Helix 8	AA8	B	20	25	Right-handed alpha
Helix 9	AA9	B	93	97	Right-handed 310
Helix 10	AB1	B	227	234	Right-handed alpha
Helix 11	AB2	B	234	249	Right-handed alpha
Helix 12	AB3	B	256	277	Right-handed alpha
Helix 13	AB4	B	278	280	Right-handed 310
Helix 14	AB5	B	288	316	Right-handed alpha
Helix 15	AB6	B	384	414	Right-handed alpha
Helix 16	AB7	C	16	26	Right-handed alpha
Helix 17	AB8	C	96	100	Right-handed 310
Helix 18	AB9	C	151	154	Right-handed 310
Helix 19	AC1	C	227	234	Right-handed alpha
Helix 20	AC2	C	235	252	Right-handed alpha
Helix 21	AC3	C	256	276	Right-handed alpha
Helix 22	AC4	C	288	316	Right-handed alpha
Helix 23	AC5	C	384	416	Right-handed alpha
Helix 24	AC6	D	16	25	Right-handed alpha
Helix 25	AC7	D	78	81	Right-handed 310
Helix 26	AC8	D	151	154	Right-handed 310
Helix 27	AC9	D	228	234	Right-handed alpha
Helix 28	AD1	D	234	251	Right-handed alpha
Helix 29	AD2	D	255	278	Right-handed alpha
Helix 30	AD3	D	288	314	Right-handed alpha
Helix 31	AD4	D	385	409	Right-handed alpha
Helix 32	AD5	E	32	37	Right-handed alpha
Helix 33	AD6	E	92	95	Right-handed 310
Helix 34	AD7	E	109	113	Right-handed 310
Helix 35	AD8	E	167	170	Right-handed 310
Helix 36	AD9	E	244	249	Right-handed alpha
Helix 37	AE1	E	252	265	Right-handed alpha
Helix 38	AE2	E	266	268	Right-handed 310
Helix 39	AE3	E	275	282	Right-handed alpha
Helix 40	AE4	E	282	298	Right-handed alpha
Helix 41	AE5	E	305	329	Right-handed alpha
Helix 42	AE6	E	451	474	Right-handed alpha

There are 20 sheets in PDB entry 7KUY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	92	first strand
Strand 2	A	123	127	anti-parallel
Strand 3	A	132	143	anti-parallel
Strand 4	A	64	76	anti-parallel
Strand 5	A	44	59	anti-parallel
Strand 6	A	173	177	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	114	first strand
Strand 2	A	132	143	anti-parallel
Strand 3	A	64	76	anti-parallel
Strand 4	A	44	59	anti-parallel
Strand 5	A	183	185	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	157	first strand
Strand 2	A	223	225	anti-parallel
Strand 3	A	194	196	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	164	first strand
Strand 2	A	213	220	anti-parallel
Strand 3	A	201	208	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	92	first strand
Strand 2	B	123	127	anti-parallel
Strand 3	B	132	144	anti-parallel
Strand 4	B	64	76	anti-parallel
Strand 5	B	44	59	anti-parallel
Strand 6	B	173	176	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	107	first strand
Strand 2	B	156	169	anti-parallel
Strand 3	B	212	225	anti-parallel
Strand 4	B	201	203	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	196	first strand
Strand 2	B	212	225	anti-parallel
Strand 3	B	207	209	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	92	first strand
Strand 2	C	123	127	anti-parallel
Strand 3	C	132	143	anti-parallel
Strand 4	C	64	76	anti-parallel
Strand 5	C	44	59	anti-parallel
Strand 6	C	173	177	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	114	first strand
Strand 2	C	132	143	anti-parallel
Strand 3	C	64	76	anti-parallel
Strand 4	C	44	59	anti-parallel
Strand 5	C	183	185	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	105	107	first strand
Strand 2	C	156	169	anti-parallel
Strand 3	C	213	225	anti-parallel
Strand 4	C	201	204	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	194	196	first strand
Strand 2	C	213	225	anti-parallel
Strand 3	C	207	208	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	89	92	first strand
Strand 2	D	124	128	anti-parallel
Strand 3	D	132	143	anti-parallel
Strand 4	D	65	76	anti-parallel
Strand 5	D	44	56	anti-parallel
Strand 6	D	173	177	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	110	114	first strand
Strand 2	D	132	143	anti-parallel
Strand 3	D	65	76	anti-parallel
Strand 4	D	44	56	anti-parallel
Strand 5	D	184	185	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	105	107	first strand
Strand 2	D	156	165	anti-parallel
Strand 3	D	216	224	anti-parallel
Strand 4	D	195	196	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	105	107	first strand
Strand 2	D	156	165	anti-parallel
Strand 3	D	216	224	anti-parallel
Strand 4	D	201	204	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	207	208	first strand
Strand 2	D	213	214	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	68	73	first strand
Strand 2	E	78	84	anti-parallel
Strand 3	E	148	159	anti-parallel
Strand 4	E	139	144	anti-parallel
Strand 5	E	105	108	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	68	73	first strand
Strand 2	E	78	84	anti-parallel
Strand 3	E	148	159	anti-parallel
Strand 4	E	86	90	anti-parallel
Strand 5	E	58	63	anti-parallel
Strand 6	E	189	193	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	65	66	first strand
Strand 2	E	200	201	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	121	123	first strand
Strand 2	E	172	185	anti-parallel
Strand 3	E	231	241	anti-parallel
Strand 4	E	218	220	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7KUY

Analysis of interatomic Contacts of Structural Units in PDB entry:
7KUY