Analysis of interatomic Contacts of Structural Units in PDB entry:
7KVB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7KVB entry

There are 6 chains in PDB entry 7KVB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 1	ALA 501
B	PHE 1	ALA 501
C	PHE 1	ALA 501
a	GLN 5	SER 75
b	GLN 5	SER 75
c	GLN 5	SER 75

There are 45 helices in PDB entry 7KVB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	82	86	Right-handed 310
Helix 2	AA2	A	154	161	Right-handed alpha
Helix 3	AA3	A	197	200	Right-handed 310
Helix 4	AA4	A	214	220	Right-handed alpha
Helix 5	AA5	A	258	266	Right-handed alpha
Helix 6	AA6	A	402	422	Right-handed alpha
Helix 7	AA7	A	423	428	Right-handed 310
Helix 8	AA8	A	435	454	Right-handed alpha
Helix 9	AA9	A	458	475	Right-handed alpha
Helix 10	AB1	A	478	499	Right-handed alpha
Helix 11	AB2	B	148	153	Right-handed alpha
Helix 12	AB3	B	154	161	Right-handed alpha
Helix 13	AB4	B	215	219	Right-handed alpha
Helix 14	AB5	B	258	266	Right-handed alpha
Helix 15	AB6	B	388	392	Right-handed 310
Helix 16	AB7	B	402	422	Right-handed alpha
Helix 17	AB8	B	423	428	Right-handed 310
Helix 18	AB9	B	433	454	Right-handed alpha
Helix 19	AC1	B	458	475	Right-handed alpha
Helix 20	AC2	B	478	499	Right-handed alpha
Helix 21	AC3	C	82	86	Right-handed 310
Helix 22	AC4	C	148	153	Right-handed alpha
Helix 23	AC5	C	154	162	Right-handed alpha
Helix 24	AC6	C	197	200	Right-handed 310
Helix 25	AC7	C	214	220	Right-handed alpha
Helix 26	AC8	C	235	238	Right-handed 310
Helix 27	AC9	C	258	266	Right-handed alpha
Helix 28	AD1	C	388	392	Right-handed 310
Helix 29	AD2	C	402	422	Right-handed alpha
Helix 30	AD3	C	423	428	Right-handed 310
Helix 31	AD4	C	433	454	Right-handed alpha
Helix 32	AD5	C	458	475	Right-handed alpha
Helix 33	AD6	C	478	499	Right-handed alpha
Helix 34	AD7	a	21	26	Right-handed 310
Helix 35	AD8	a	29	39	Right-handed alpha
Helix 36	AD9	a	41	54	Right-handed alpha
Helix 37	AE1	a	56	71	Right-handed alpha
Helix 38	AE2	b	21	26	Right-handed 310
Helix 39	AE3	b	29	39	Right-handed alpha
Helix 40	AE4	b	41	54	Right-handed alpha
Helix 41	AE5	b	56	71	Right-handed alpha
Helix 42	AE6	c	21	26	Right-handed 310
Helix 43	AE7	c	29	39	Right-handed alpha
Helix 44	AE8	c	41	54	Right-handed alpha
Helix 45	AE9	c	56	71	Right-handed alpha

There are 25 sheets in PDB entry 7KVB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	14	first strand
Strand 2	A	30	35	parallel
Strand 3	A	41	51	anti-parallel
Strand 4	A	136	143	anti-parallel
Strand 5	A	165	169	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	14	first strand
Strand 2	A	30	35	parallel
Strand 3	A	41	51	anti-parallel
Strand 4	A	278	281	anti-parallel
Strand 5	A	273	275	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	23	first strand
Strand 2	A	288	291	anti-parallel
Strand 3	A	185	188	anti-parallel
Strand 4	A	176	179	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	210	first strand
Strand 2	A	202	206	anti-parallel
Strand 3	A	124	129	anti-parallel
Strand 4	A	54	60	anti-parallel
Strand 5	A	225	226	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	72	first strand
Strand 2	A	109	121	anti-parallel
Strand 3	A	90	99	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	242	first strand
Strand 2	A	252	254	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	309	317	first strand
Strand 2	A	323	329	anti-parallel
Strand 3	A	369	375	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	336	337	first strand
Strand 2	A	361	362	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	343	first strand
Strand 2	A	380	386	anti-parallel
Strand 3	A	393	399	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	13	first strand
Strand 2	B	29	34	parallel
Strand 3	B	41	51	anti-parallel
Strand 4	B	136	143	anti-parallel
Strand 5	B	164	169	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	13	first strand
Strand 2	B	29	34	parallel
Strand 3	B	41	51	anti-parallel
Strand 4	B	278	281	anti-parallel
Strand 5	B	273	275	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	23	first strand
Strand 2	B	288	291	anti-parallel
Strand 3	B	185	190	anti-parallel
Strand 4	B	175	179	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	99	first strand
Strand 2	B	109	129	anti-parallel
Strand 3	B	54	72	anti-parallel
Strand 4	B	225	226	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	99	first strand
Strand 2	B	109	129	anti-parallel
Strand 3	B	201	206	anti-parallel
Strand 4	B	209	214	anti-parallel
Strand 5	B	270	271	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	242	first strand
Strand 2	B	252	254	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	309	317	first strand
Strand 2	B	323	329	anti-parallel
Strand 3	B	369	375	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	336	337	first strand
Strand 2	B	361	362	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	351	353	first strand
Strand 2	B	340	343	anti-parallel
Strand 3	B	380	386	anti-parallel
Strand 4	B	393	399	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	13	first strand
Strand 2	C	31	34	parallel
Strand 3	C	41	49	anti-parallel
Strand 4	C	278	281	anti-parallel
Strand 5	C	270	275	anti-parallel
Strand 6	C	209	212	anti-parallel
Strand 7	C	202	206	anti-parallel
Strand 8	C	112	129	anti-parallel
Strand 9	C	136	143	first strand
Strand 10	C	165	169	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	95	first strand
Strand 2	C	112	129	anti-parallel
Strand 3	C	202	206	anti-parallel
Strand 4	C	209	212	anti-parallel
Strand 5	C	270	275	anti-parallel
Strand 6	C	278	281	anti-parallel
Strand 7	C	41	49	anti-parallel
Strand 8	C	54	73	first strand
Strand 9	C	225	226	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	23	first strand
Strand 2	C	288	291	anti-parallel
Strand 3	C	185	189	anti-parallel
Strand 4	C	175	179	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	240	242	first strand
Strand 2	C	252	254	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	309	317	first strand
Strand 2	C	323	329	anti-parallel
Strand 3	C	369	375	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	336	337	first strand
Strand 2	C	361	362	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	351	353	first strand
Strand 2	C	340	343	anti-parallel
Strand 3	C	380	386	anti-parallel
Strand 4	C	396	399	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7KVB

Analysis of interatomic Contacts of Structural Units in PDB entry:
7KVB