Analysis of interatomic Contacts of Structural Units in PDB entry:
7KVC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7KVC entry

There are 10 chains in PDB entry 7KVC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 5	VAL 337
B	GLU 5	VAL 337
C	GLU 5	VAL 337
D	GLU 5	VAL 337
E	GLU 5	VAL 337
F	GLU 5	VAL 337
G	GLU 5	VAL 337
H	GLU 5	VAL 337
I	GLU 5	VAL 337
J	GLU 5	VAL 337

There are100 helices in PDB entry 7KVC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	52	62	Right-handed alpha
Helix 2	AA2	A	64	68	Right-handed 310
Helix 3	AA3	A	80	101	Right-handed alpha
Helix 4	AA4	A	173	201	Right-handed alpha
Helix 5	AA5	A	203	208	Right-handed 310
Helix 6	AA6	A	211	213	Right-handed 310
Helix 7	AA7	A	214	227	Right-handed alpha
Helix 8	AA8	A	239	247	Right-handed alpha
Helix 9	AA9	A	251	259	Right-handed alpha
Helix 10	AB1	A	271	276	Right-handed alpha
Helix 11	AB2	B	52	62	Right-handed alpha
Helix 12	AB3	B	64	68	Right-handed 310
Helix 13	AB4	B	80	101	Right-handed alpha
Helix 14	AB5	B	173	201	Right-handed alpha
Helix 15	AB6	B	203	208	Right-handed 310
Helix 16	AB7	B	211	213	Right-handed 310
Helix 17	AB8	B	214	227	Right-handed alpha
Helix 18	AB9	B	239	247	Right-handed alpha
Helix 19	AC1	B	251	259	Right-handed alpha
Helix 20	AC2	B	271	276	Right-handed alpha
Helix 21	AC3	C	52	62	Right-handed alpha
Helix 22	AC4	C	64	68	Right-handed 310
Helix 23	AC5	C	80	101	Right-handed alpha
Helix 24	AC6	C	173	201	Right-handed alpha
Helix 25	AC7	C	203	208	Right-handed 310
Helix 26	AC8	C	211	213	Right-handed 310
Helix 27	AC9	C	214	227	Right-handed alpha
Helix 28	AD1	C	239	247	Right-handed alpha
Helix 29	AD2	C	251	259	Right-handed alpha
Helix 30	AD3	C	271	276	Right-handed alpha
Helix 31	AD4	D	52	62	Right-handed alpha
Helix 32	AD5	D	64	68	Right-handed 310
Helix 33	AD6	D	80	101	Right-handed alpha
Helix 34	AD7	D	173	201	Right-handed alpha
Helix 35	AD8	D	203	208	Right-handed 310
Helix 36	AD9	D	211	213	Right-handed 310
Helix 37	AE1	D	214	227	Right-handed alpha
Helix 38	AE2	D	239	247	Right-handed alpha
Helix 39	AE3	D	251	259	Right-handed alpha
Helix 40	AE4	D	271	276	Right-handed alpha
Helix 41	AE5	E	52	62	Right-handed alpha
Helix 42	AE6	E	64	68	Right-handed 310
Helix 43	AE7	E	80	101	Right-handed alpha
Helix 44	AE8	E	173	201	Right-handed alpha
Helix 45	AE9	E	203	208	Right-handed 310
Helix 46	AF1	E	211	213	Right-handed 310
Helix 47	AF2	E	214	227	Right-handed alpha
Helix 48	AF3	E	239	247	Right-handed alpha
Helix 49	AF4	E	251	259	Right-handed alpha
Helix 50	AF5	E	271	276	Right-handed alpha
Helix 51	AF6	F	52	62	Right-handed alpha
Helix 52	AF7	F	64	68	Right-handed 310
Helix 53	AF8	F	80	101	Right-handed alpha
Helix 54	AF9	F	173	201	Right-handed alpha
Helix 55	AG1	F	203	208	Right-handed 310
Helix 56	AG2	F	211	213	Right-handed 310
Helix 57	AG3	F	214	227	Right-handed alpha
Helix 58	AG4	F	239	247	Right-handed alpha
Helix 59	AG5	F	251	259	Right-handed alpha
Helix 60	AG6	F	271	276	Right-handed alpha
Helix 61	AG7	G	52	62	Right-handed alpha
Helix 62	AG8	G	64	68	Right-handed 310
Helix 63	AG9	G	80	101	Right-handed alpha
Helix 64	AH1	G	173	201	Right-handed alpha
Helix 65	AH2	G	203	208	Right-handed 310
Helix 66	AH3	G	211	213	Right-handed 310
Helix 67	AH4	G	214	227	Right-handed alpha
Helix 68	AH5	G	239	247	Right-handed alpha
Helix 69	AH6	G	251	259	Right-handed alpha
Helix 70	AH7	G	271	276	Right-handed alpha
Helix 71	AH8	H	52	62	Right-handed alpha
Helix 72	AH9	H	64	68	Right-handed 310
Helix 73	AI1	H	80	101	Right-handed alpha
Helix 74	AI2	H	173	201	Right-handed alpha
Helix 75	AI3	H	203	208	Right-handed 310
Helix 76	AI4	H	211	213	Right-handed 310
Helix 77	AI5	H	214	227	Right-handed alpha
Helix 78	AI6	H	239	247	Right-handed alpha
Helix 79	AI7	H	251	259	Right-handed alpha
Helix 80	AI8	H	271	276	Right-handed alpha
Helix 81	AI9	I	52	62	Right-handed alpha
Helix 82	AJ1	I	64	68	Right-handed 310
Helix 83	AJ2	I	80	101	Right-handed alpha
Helix 84	AJ3	I	173	201	Right-handed alpha
Helix 85	AJ4	I	203	208	Right-handed 310
Helix 86	AJ5	I	211	213	Right-handed 310
Helix 87	AJ6	I	214	227	Right-handed alpha
Helix 88	AJ7	I	239	247	Right-handed alpha
Helix 89	AJ8	I	251	259	Right-handed alpha
Helix 90	AJ9	I	271	276	Right-handed alpha
Helix 91	AK1	J	52	62	Right-handed alpha
Helix 92	AK2	J	64	68	Right-handed 310
Helix 93	AK3	J	80	101	Right-handed alpha
Helix 94	AK4	J	173	201	Right-handed alpha
Helix 95	AK5	J	203	208	Right-handed 310
Helix 96	AK6	J	211	213	Right-handed 310
Helix 97	AK7	J	214	227	Right-handed alpha
Helix 98	AK8	J	239	247	Right-handed alpha
Helix 99	AK9	J	251	259	Right-handed alpha
Helix 100	AL1	J	271	276	Right-handed alpha

There are 30 sheets in PDB entry 7KVC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	17	first strand
Strand 2	A	45	49	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	159	first strand
Strand 2	A	122	125	anti-parallel
Strand 3	A	115	117	anti-parallel
Strand 4	A	309	310	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	285	first strand
Strand 2	A	290	298	anti-parallel
Strand 3	A	302	305	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	17	first strand
Strand 2	B	45	49	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	159	first strand
Strand 2	B	122	125	anti-parallel
Strand 3	B	115	117	anti-parallel
Strand 4	B	309	310	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	279	285	first strand
Strand 2	B	290	298	anti-parallel
Strand 3	B	302	305	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	17	first strand
Strand 2	C	45	49	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	156	159	first strand
Strand 2	C	122	125	anti-parallel
Strand 3	C	115	117	anti-parallel
Strand 4	C	309	310	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	279	285	first strand
Strand 2	C	290	298	anti-parallel
Strand 3	C	302	305	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	17	first strand
Strand 2	D	45	49	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	156	159	first strand
Strand 2	D	122	125	anti-parallel
Strand 3	D	115	117	anti-parallel
Strand 4	D	309	310	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	279	285	first strand
Strand 2	D	290	298	anti-parallel
Strand 3	D	302	305	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	17	first strand
Strand 2	E	45	49	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	156	159	first strand
Strand 2	E	122	125	anti-parallel
Strand 3	E	115	117	anti-parallel
Strand 4	E	309	310	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	279	285	first strand
Strand 2	E	290	298	anti-parallel
Strand 3	E	302	305	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	13	17	first strand
Strand 2	F	45	49	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	156	159	first strand
Strand 2	F	122	125	anti-parallel
Strand 3	F	115	117	anti-parallel
Strand 4	F	309	310	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	279	285	first strand
Strand 2	F	290	298	anti-parallel
Strand 3	F	302	305	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	13	17	first strand
Strand 2	G	45	49	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	156	159	first strand
Strand 2	G	122	125	anti-parallel
Strand 3	G	115	117	anti-parallel
Strand 4	G	309	310	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	279	285	first strand
Strand 2	G	290	298	anti-parallel
Strand 3	G	302	305	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	13	17	first strand
Strand 2	H	45	49	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	156	159	first strand
Strand 2	H	122	125	anti-parallel
Strand 3	H	115	117	anti-parallel
Strand 4	H	309	310	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	279	285	first strand
Strand 2	H	290	298	anti-parallel
Strand 3	H	302	305	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	13	17	first strand
Strand 2	I	45	49	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	156	159	first strand
Strand 2	I	122	125	anti-parallel
Strand 3	I	115	117	anti-parallel
Strand 4	I	309	310	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	279	285	first strand
Strand 2	I	290	298	anti-parallel
Strand 3	I	302	305	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	13	17	first strand
Strand 2	J	45	49	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	156	159	first strand
Strand 2	J	122	125	anti-parallel
Strand 3	J	115	117	anti-parallel
Strand 4	J	309	310	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	279	285	first strand
Strand 2	J	290	298	anti-parallel
Strand 3	J	302	305	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7KVC

Analysis of interatomic Contacts of Structural Units in PDB entry:
7KVC