Analysis of interatomic Contacts of Structural Units in PDB entry:
7KVF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7KVF entry

There is 1 chain in PDB entry 7KVF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ALA 1	TYR 2196

There are 17 helices in PDB entry 7KVF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	23	28	Right-handed alpha
Helix 2	AA2	B	42	46	Right-handed 310
Helix 3	AA3	B	191	195	Right-handed 310
Helix 4	AA4	B	344	352	Right-handed alpha
Helix 5	AA5	B	482	490	Right-handed alpha
Helix 6	AA6	B	526	528	Right-handed 310
Helix 7	AA7	B	549	556	Right-handed alpha
Helix 8	AA8	B	1608	1612	Right-handed 310
Helix 9	AA9	B	1650	1654	Right-handed 310
Helix 10	AB1	B	1665	1669	Right-handed 310
Helix 11	AB2	B	1685	1689	Right-handed 310
Helix 12	AB3	B	1707	1713	Right-handed alpha
Helix 13	AB4	B	1768	1772	Right-handed 310
Helix 14	AB5	B	1860	1865	Right-handed alpha
Helix 15	AB6	B	1891	1893	Right-handed 310
Helix 16	AB7	B	1905	1909	Right-handed 310
Helix 17	AB8	B	2050	2052	Right-handed 310

There are 21 sheets in PDB entry 7KVF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	40	first strand
Strand 2	B	3	12	anti-parallel
Strand 3	B	69	73	parallel
Strand 4	B	122	125	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	64	first strand
Strand 2	B	159	164	parallel
Strand 3	B	142	145	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	76	first strand
Strand 2	B	118	119	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	189	first strand
Strand 2	B	224	233	parallel
Strand 3	B	266	271	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	217	219	first strand
Strand 2	B	295	298	parallel
Strand 3	B	278	282	anti-parallel
Strand 4	B	238	243	anti-parallel
Strand 5	B	259	261	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	370	371	first strand
Strand 2	B	324	328	anti-parallel
Strand 3	B	405	409	parallel
Strand 4	B	453	454	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	394	397	first strand
Strand 2	B	492	497	parallel
Strand 3	B	473	478	anti-parallel
Strand 4	B	418	419	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	515	520	first strand
Strand 2	B	579	586	parallel
Strand 3	B	621	626	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	522	524	first strand
Strand 2	B	557	559	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	612	615	first strand
Strand 2	B	594	597	anti-parallel
Strand 3	B	636	637	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1550	1554	first strand
Strand 2	B	1626	1632	parallel
Strand 3	B	1678	1683	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1556	1563	first strand
Strand 2	B	1587	1594	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1697	1698	first strand
Strand 2	B	1722	1723	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1701	1703	first strand
Strand 2	B	1717	1719	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1776	1780	first strand
Strand 2	B	1740	1749	anti-parallel
Strand 3	B	1799	1803	parallel
Strand 4	B	1841	1845	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1791	1792	first strand
Strand 2	B	1873	1874	parallel
Strand 3	B	1852	1853	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1834	1836	first strand
Strand 2	B	1812	1816	anti-parallel
Strand 3	B	1856	1858	anti-parallel
Strand 4	B	1869	1870	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1881	1882	first strand
Strand 2	B	2030	2032	anti-parallel
Strand 3	B	1943	1950	anti-parallel
Strand 4	B	2000	2010	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1895	1897	first strand
Strand 2	B	1935	1937	anti-parallel
Strand 3	B	2012	2020	anti-parallel
Strand 4	B	1962	1970	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2040	2041	first strand
Strand 2	B	2189	2193	anti-parallel
Strand 3	B	2095	2110	anti-parallel
Strand 4	B	2160	2181	anti-parallel
Strand 5	B	2120	2129	anti-parallel
Strand 6	B	2112	2113	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2054	2056	first strand
Strand 2	B	2095	2110	anti-parallel
Strand 3	B	2160	2181	anti-parallel
Strand 4	B	2120	2129	anti-parallel
Strand 5	B	2137	2138	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7KVF

Analysis of interatomic Contacts of Structural Units in PDB entry:
7KVF