Analysis of interatomic Contacts of Structural Units in PDB entry:
7KWB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7KWB entry

There are 2 chains in PDB entry 7KWB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 38	ASP 459
B	ASP 45	ASP 459

There are 11 helices in PDB entry 7KWB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	39	43	Right-handed 310
Helix 2	AA2	A	136	141	Right-handed alpha
Helix 3	AA3	A	152	155	Right-handed 310
Helix 4	AA4	A	305	309	Right-handed 310
Helix 5	AA5	A	323	326	Right-handed 310
Helix 6	AA6	A	395	400	Right-handed 310
Helix 7	AA7	B	136	140	Right-handed 310
Helix 8	AA8	B	152	155	Right-handed 310
Helix 9	AA9	B	305	309	Right-handed 310
Helix 10	AB1	B	323	326	Right-handed 310
Helix 11	AB2	B	395	400	Right-handed 310

There are 13 sheets in PDB entry 7KWB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	52	first strand
Strand 2	A	57	62	anti-parallel
Strand 3	A	84	88	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	74	first strand
Strand 2	A	93	102	anti-parallel
Strand 3	A	112	118	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	150	first strand
Strand 2	A	183	188	anti-parallel
Strand 3	A	256	261	anti-parallel
Strand 4	A	211	220	anti-parallel
Strand 5	A	223	235	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	165	first strand
Strand 2	A	168	173	anti-parallel
Strand 3	A	269	280	anti-parallel
Strand 4	A	198	207	anti-parallel
Strand 5	A	241	249	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	316	321	first strand
Strand 2	A	354	359	anti-parallel
Strand 3	A	432	439	anti-parallel
Strand 4	A	383	392	anti-parallel
Strand 5	A	402	411	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	332	336	first strand
Strand 2	A	339	344	anti-parallel
Strand 3	A	445	456	anti-parallel
Strand 4	A	370	379	anti-parallel
Strand 5	A	417	425	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	52	first strand
Strand 2	B	57	60	anti-parallel
Strand 3	B	85	88	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	74	first strand
Strand 2	B	93	98	anti-parallel
Strand 3	B	114	118	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	150	first strand
Strand 2	B	183	188	anti-parallel
Strand 3	B	256	261	anti-parallel
Strand 4	B	211	220	anti-parallel
Strand 5	B	223	230	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	150	first strand
Strand 2	B	183	188	anti-parallel
Strand 3	B	256	261	anti-parallel
Strand 4	B	211	220	anti-parallel
Strand 5	B	233	235	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	165	first strand
Strand 2	B	168	173	anti-parallel
Strand 3	B	269	280	anti-parallel
Strand 4	B	198	207	anti-parallel
Strand 5	B	241	249	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	315	321	first strand
Strand 2	B	354	360	anti-parallel
Strand 3	B	432	437	anti-parallel
Strand 4	B	383	392	anti-parallel
Strand 5	B	402	411	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	332	335	first strand
Strand 2	B	339	344	anti-parallel
Strand 3	B	445	456	anti-parallel
Strand 4	B	370	379	anti-parallel
Strand 5	B	417	425	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7KWB

Analysis of interatomic Contacts of Structural Units in PDB entry:
7KWB