Analysis of interatomic Contacts of Structural Units in PDB entry:
7KWD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7KWD entry

There are 2 chains in PDB entry 7KWD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 17ARG 489
B
 ALA 17ARG 489
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 7KWD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 30Right-handed 310
Helix 2
AA2
A
50 66Right-handed alpha
Helix 3
AA3
A
69 76Right-handed alpha
Helix 4
AA4
A
94 105Right-handed alpha
Helix 5
AA5
A
124 132Right-handed alpha
Helix 6
AA6
A
146 154Right-handed alpha
Helix 7
AA7
A
161 173Right-handed alpha
Helix 8
AA8
A
181 185Right-handed 310
Helix 9
AA9
A
195 203Right-handed alpha
Helix 10
AB1
A
210 217Right-handed alpha
Helix 11
AB2
A
233 240Right-handed alpha
Helix 12
AB3
A
246 260Right-handed alpha
Helix 13
AB4
A
272 281Right-handed alpha
Helix 14
AB5
A
282 307Right-handed alpha
Helix 15
AB6
A
329 333Right-handed 310
Helix 16
AB7
A
334 335Right-handed 310
Helix 17
AB8
A
336 341Right-handed alpha
Helix 18
AB9
A
348 357Right-handed alpha
Helix 19
AC1
A
361 374Right-handed alpha
Helix 20
AC2
A
378 392Right-handed alpha
Helix 21
AC3
A
405 413Right-handed alpha
Helix 22
AC4
A
458 469Right-handed alpha
Helix 23
AC5
A
478 488Right-handed alpha
Helix 24
AC6
B
22 30Right-handed 310
Helix 25
AC7
B
50 66Right-handed alpha
Helix 26
AC8
B
69 76Right-handed alpha
Helix 27
AC9
B
94 105Right-handed alpha
Helix 28
AD1
B
124 132Right-handed alpha
Helix 29
AD2
B
146 151Right-handed alpha
Helix 30
AD3
B
161 173Right-handed alpha
Helix 31
AD4
B
181 185Right-handed 310
Helix 32
AD5
B
195 203Right-handed alpha
Helix 33
AD6
B
210 217Right-handed alpha
Helix 34
AD7
B
233 241Right-handed alpha
Helix 35
AD8
B
246 260Right-handed alpha
Helix 36
AD9
B
273 281Right-handed alpha
Helix 37
AE1
B
282 307Right-handed alpha
Helix 38
AE2
B
329 333Right-handed 310
Helix 39
AE3
B
334 335Right-handed 310
Helix 40
AE4
B
336 341Right-handed alpha
Helix 41
AE5
B
348 357Right-handed alpha
Helix 42
AE6
B
361 374Right-handed alpha
Helix 43
AE7
B
378 392Right-handed alpha
Helix 44
AE8
B
405 413Right-handed alpha
Helix 45
AE9
B
458 469Right-handed alpha
Helix 46
AF1
B
478 488Right-handed alpha
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There are 5 sheets in PDB entry 7KWD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 208first strand
Strand 2
A
222 225parallel
Strand 3
A
176 180parallel
Strand 4
A
135 143parallel
Strand 5
A
265 271parallel
Strand 6
A
40 46parallel
Strand 7
A
310 316parallel
Strand 8
A
438 443anti-parallel
Strand 9
A
80 84anti-parallel
Strand 10
A
454 456parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
319 320first strand
Strand 2
A
433 434anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 325first strand
Strand 2
A
426 428anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 208first strand
Strand 2
B
222 225parallel
Strand 3
B
176 180parallel
Strand 4
B
135 143parallel
Strand 5
B
265 271parallel
Strand 6
B
40 46parallel
Strand 7
B
310 316parallel
Strand 8
B
438 443anti-parallel
Strand 9
B
80 84anti-parallel
Strand 10
B
454 456parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
319 325first strand
Strand 2
B
426 434anti-parallel
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