Analysis of interatomic Contacts of Structural Units in PDB entry:
7KWG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7KWG entry

There are 21 chains in PDB entry 7KWG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	A 7	A 38
a	C 5	U 1556
b	MET 6	SER 229
c	GLN 3	GLY 204
d	ARG 3	ARG 200
e	ALA 2	ASN 166
f	MET 1	GLU 96
g	VAL 7	TRP 156
h	THR 2	TRP 132
i	VAL 6	SER 130
j	LYS 5	LYS 101
k	ARG 10	ARG 127
l	PRO 2	LYS 136
m	ARG 14	LYS 114
n	LYS 3	TRP 61
o	ALA 2	ARG 89
p	ALA 2	LYS 91
q	SER 2	ILE 87
r	GLY 9	GLU 78
s	PRO 9	PHE 80
t	ASN 3	ASN 82

There are 70 helices in PDB entry 7KWG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	b	42	60	Right-handed alpha
Helix 2	AA2	b	76	88	Right-handed alpha
Helix 3	AA3	b	103	108	Right-handed alpha
Helix 4	AA4	b	108	117	Right-handed alpha
Helix 5	AA5	b	118	120	Right-handed 310
Helix 6	AA6	b	130	147	Right-handed alpha
Helix 7	AA7	b	169	178	Right-handed alpha
Helix 8	AA8	b	206	219	Right-handed alpha
Helix 9	AA9	b	221	226	Right-handed alpha
Helix 10	AB1	c	6	11	Right-handed alpha
Helix 11	AB2	c	28	50	Right-handed alpha
Helix 12	AB3	c	71	75	Right-handed 310
Helix 13	AB4	c	81	95	Right-handed alpha
Helix 14	AB5	c	107	110	Right-handed 310
Helix 15	AB6	c	111	125	Right-handed alpha
Helix 16	AB7	c	128	142	Right-handed alpha
Helix 17	AB8	d	9	14	Right-handed alpha
Helix 18	AB9	d	45	62	Right-handed alpha
Helix 19	AC1	d	64	74	Right-handed alpha
Helix 20	AC2	d	81	91	Right-handed alpha
Helix 21	AC3	d	93	101	Right-handed alpha
Helix 22	AC4	d	106	116	Right-handed alpha
Helix 23	AC5	d	142	146	Right-handed 310
Helix 24	AC6	d	148	155	Right-handed alpha
Helix 25	AC7	d	191	196	Right-handed alpha
Helix 26	AC8	d	197	200	Right-handed 310
Helix 27	AC9	e	55	66	Right-handed alpha
Helix 28	AD1	e	109	116	Right-handed alpha
Helix 29	AD2	e	132	145	Right-handed alpha
Helix 30	AD3	e	149	157	Right-handed alpha
Helix 31	AD4	f	15	30	Right-handed alpha
Helix 32	AD5	f	72	80	Right-handed alpha
Helix 33	AD6	g	20	30	Right-handed alpha
Helix 34	AD7	g	35	54	Right-handed alpha
Helix 35	AD8	g	57	67	Right-handed alpha
Helix 36	AD9	g	92	107	Right-handed alpha
Helix 37	AE1	g	119	129	Right-handed alpha
Helix 38	AE2	g	133	148	Right-handed alpha
Helix 39	AE3	h	5	17	Right-handed alpha
Helix 40	AE4	h	31	43	Right-handed alpha
Helix 41	AE5	h	97	101	Right-handed 310
Helix 42	AE6	h	114	120	Right-handed alpha
Helix 43	AE7	i	31	35	Right-handed 310
Helix 44	AE8	i	52	57	Right-handed alpha
Helix 45	AE9	i	74	93	Right-handed alpha
Helix 46	AF1	i	96	102	Right-handed alpha
Helix 47	AF2	j	14	32	Right-handed alpha
Helix 48	AF3	j	82	87	Right-handed alpha
Helix 49	AF4	k	53	57	Right-handed 310
Helix 50	AF5	k	59	78	Right-handed alpha
Helix 51	AF6	k	93	103	Right-handed alpha
Helix 52	AF7	l	3	8	Right-handed alpha
Helix 53	AF8	m	67	81	Right-handed alpha
Helix 54	AF9	m	87	91	Right-handed 310
Helix 55	AG1	n	4	11	Right-handed alpha
Helix 56	AG2	n	42	51	Right-handed alpha
Helix 57	AG3	o	4	12	Right-handed alpha
Helix 58	AG4	o	24	43	Right-handed alpha
Helix 59	AG5	o	50	74	Right-handed alpha
Helix 60	AG6	o	74	86	Right-handed alpha
Helix 61	AG7	p	55	63	Right-handed alpha
Helix 62	AG8	p	68	79	Right-handed alpha
Helix 63	AG9	p	79	89	Right-handed alpha
Helix 64	AH1	r	30	35	Right-handed alpha
Helix 65	AH2	r	46	51	Right-handed alpha
Helix 66	AH3	r	53	70	Right-handed alpha
Helix 67	AH4	s	15	20	Right-handed alpha
Helix 68	AH5	t	8	38	Right-handed alpha
Helix 69	AH6	t	45	60	Right-handed alpha
Helix 70	AH7	t	74	79	Right-handed alpha

There are 24 sheets in PDB entry 7KWG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	31	35	first strand
Strand 2	b	38	41	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	90	92	first strand
Strand 2	b	68	70	parallel
Strand 3	b	162	163	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	20	21	first strand
Strand 2	c	51	57	parallel
Strand 3	c	62	69	anti-parallel
Strand 4	c	97	104	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	162	166	first strand
Strand 2	c	147	155	anti-parallel
Strand 3	c	169	170	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	162	166	first strand
Strand 2	c	147	155	anti-parallel
Strand 3	c	199	202	anti-parallel
Strand 4	c	181	184	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	187	190	first strand
Strand 2	c	193	196	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	120	121	first strand
Strand 2	d	138	140	anti-parallel
Strand 3	d	174	176	anti-parallel
Strand 4	d	165	166	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	14	21	first strand
Strand 2	e	32	40	anti-parallel
Strand 3	e	46	53	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	85	87	first strand
Strand 2	e	94	98	anti-parallel
Strand 3	e	123	126	anti-parallel
Strand 4	e	105	106	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	36	40	first strand
Strand 2	f	58	66	anti-parallel
Strand 3	f	44	46	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	36	40	first strand
Strand 2	f	58	66	anti-parallel
Strand 3	f	4	10	anti-parallel
Strand 4	f	86	93	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	73	74	first strand
Strand 2	g	89	90	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	25	26	first strand
Strand 2	h	61	64	anti-parallel
Strand 3	h	46	50	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	76	79	first strand
Strand 2	h	125	132	anti-parallel
Strand 3	h	88	89	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	76	79	first strand
Strand 2	h	125	132	anti-parallel
Strand 3	h	103	108	anti-parallel
Strand 4	h	111	113	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	i	8	9	first strand
Strand 2	i	22	25	anti-parallel
Strand 3	i	63	65	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	i	12	13	first strand
Strand 2	i	18	19	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	j	36	41	first strand
Strand 2	j	71	76	anti-parallel
Strand 3	j	6	11	anti-parallel
Strand 4	j	97	100	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	j	47	52	first strand
Strand 2	j	62	67	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	k	41	45	first strand
Strand 2	k	30	35	anti-parallel
Strand 3	k	18	25	anti-parallel
Strand 4	k	81	87	parallel
Strand 5	k	106	110	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	75	79	first strand
Strand 2	l	65	70	anti-parallel
Strand 3	l	42	50	anti-parallel
Strand 4	l	92	96	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	5	11	first strand
Strand 2	p	16	22	anti-parallel
Strand 3	p	35	41	anti-parallel
Strand 4	p	49	50	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	q	9	19	first strand
Strand 2	q	22	30	anti-parallel
Strand 3	q	41	49	anti-parallel
Strand 4	q	75	82	parallel
Strand 5	q	60	65	anti-parallel
Strand 6	q	9	19	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	s	31	33	first strand
Strand 2	s	48	52	parallel
Strand 3	s	57	61	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7KWG

Analysis of interatomic Contacts of Structural Units in PDB entry:
7KWG