Analysis of interatomic Contacts of Structural Units in PDB entry:
7KX8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7KX8 entry

There are 2 chains in PDB entry 7KX8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 382PHE 670
B
 PHE 380VAL 647
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 7KX8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
383 388Right-handed alpha
Helix 2
AA2
A
431 441Right-handed alpha
Helix 3
AA3
A
484 505Right-handed alpha
Helix 4
AA4
A
513 515Right-handed 310
Helix 5
AA5
A
550 554Right-handed 310
Helix 6
AA6
A
555 561Right-handed alpha
Helix 7
AA7
A
567 583Right-handed alpha
Helix 8
AA8
A
595 604Right-handed alpha
Helix 9
AA9
A
617 628Right-handed alpha
Helix 10
AB1
A
637 643Right-handed alpha
Helix 11
AB2
A
662 670Right-handed alpha
Helix 12
AB3
B
383 388Right-handed alpha
Helix 13
AB4
B
434 441Right-handed alpha
Helix 14
AB5
B
484 505Right-handed alpha
Helix 15
AB6
B
513 515Right-handed 310
Helix 16
AB7
B
555 561Right-handed alpha
Helix 17
AB8
B
567 583Right-handed alpha
Helix 18
AB9
B
596 604Right-handed alpha
Helix 19
AC1
B
617 628Right-handed alpha
Helix 20
AC2
B
637 643Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 7KX8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
390 398first strand
Strand 2
A
403 409anti-parallel
Strand 3
A
414 422anti-parallel
Strand 4
A
460 465anti-parallel
Strand 5
A
451 456anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
426 427first strand
Strand 2
B
547 548anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
507 508first strand
Strand 2
A
538 539anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
517 520first strand
Strand 2
A
528 531anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
390 395first strand
Strand 2
B
402 409anti-parallel
Strand 3
B
414 422anti-parallel
Strand 4
B
460 466anti-parallel
Strand 5
B
451 456anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
507 508first strand
Strand 2
B
538 539anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
517 520first strand
Strand 2
B
528 531anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il