Analysis of interatomic Contacts of Structural Units in PDB entry:
7KXW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7KXW entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 3 chains in PDB entry 7KXW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 382TYR 483
A
 GLU 485ASN 648
B
 ILE 382ASP 649
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 7KXW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
384 389Right-handed alpha
Helix 2
AA2
A
431 443Right-handed alpha
Helix 3
AA3
A
472 481Right-handed alpha
Helix 4
AA4
A
484 505Right-handed alpha
Helix 5
AA5
A
513 515Right-handed 310
Helix 6
AA6
A
550 554Right-handed 310
Helix 7
AA7
A
555 561Right-handed alpha
Helix 8
AA8
A
567 583Right-handed alpha
Helix 9
AA9
A
595 604Right-handed alpha
Helix 10
AB1
A
617 628Right-handed alpha
Helix 11
AB2
A
637 643Right-handed alpha
Helix 12
AB3
B
383 389Right-handed alpha
Helix 13
AB4
B
429 443Right-handed alpha
Helix 14
AB5
B
472 481Right-handed alpha
Helix 15
AB6
B
484 505Right-handed alpha
Helix 16
AB7
B
513 515Right-handed 310
Helix 17
AB8
B
550 554Right-handed 310
Helix 18
AB9
B
555 560Right-handed alpha
Helix 19
AC1
B
567 583Right-handed alpha
Helix 20
AC2
B
595 604Right-handed alpha
Helix 21
AC3
B
611 615Right-handed 310
Helix 22
AC4
B
617 628Right-handed alpha
Helix 23
AC5
B
637 643Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 7KXW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
390 395first strand
Strand 2
A
403 409anti-parallel
Strand 3
A
415 421anti-parallel
Strand 4
A
461 466anti-parallel
Strand 5
A
451 456anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
507 508first strand
Strand 2
A
538 539anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
517 519first strand
Strand 2
A
529 531anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
390 395first strand
Strand 2
B
402 409anti-parallel
Strand 3
B
415 422anti-parallel
Strand 4
B
460 465anti-parallel
Strand 5
B
451 456anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
507 508first strand
Strand 2
B
538 539anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
517 521first strand
Strand 2
B
527 531anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il