Analysis of interatomic Contacts of Structural Units in PDB entry:
7KY7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7KY7 entry

There are 2 chains in PDB entry 7KY7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 279PRO 1475
B
 ARG 51MET 413
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 52 helices in PDB entry 7KY7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
282 299Right-handed alpha
Helix 2
AA2
A
588 621Right-handed alpha
Helix 3
AA3
A
626 631Right-handed alpha
Helix 4
AA4
A
641 654Right-handed alpha
Helix 5
AA5
A
659 679Right-handed alpha
Helix 6
AA6
A
702 706Right-handed 310
Helix 7
AA7
A
739 750Right-handed alpha
Helix 8
AA8
A
756 779Right-handed alpha
Helix 9
AA9
A
785 789Right-handed 310
Helix 10
AB1
A
794 803Right-handed alpha
Helix 11
AB2
A
806 822Right-handed alpha
Helix 12
AB3
A
843 856Right-handed alpha
Helix 13
AB4
A
933 950Right-handed alpha
Helix 14
AB5
A
966 977Right-handed alpha
Helix 15
AB6
A
984 994Right-handed alpha
Helix 16
AB7
A
1013 1024Right-handed alpha
Helix 17
AB8
A
1036 1046Right-handed alpha
Helix 18
AB9
A
1071 1087Right-handed alpha
Helix 19
AC1
A
1094 1102Right-handed alpha
Helix 20
AC2
A
1116 1122Right-handed alpha
Helix 21
AC3
A
1126 1137Right-handed alpha
Helix 22
AC4
A
1149 1162Right-handed alpha
Helix 23
AC5
A
1174 1182Right-handed alpha
Helix 24
AC6
A
1196 1201Right-handed alpha
Helix 25
AC7
A
1210 1217Right-handed alpha
Helix 26
AC8
A
1218 1248Right-handed alpha
Helix 27
AC9
A
1249 1255Right-handed 310
Helix 28
AD1
A
1263 1271Right-handed alpha
Helix 29
AD2
A
1274 1284Right-handed alpha
Helix 30
AD3
A
1288 1295Right-handed alpha
Helix 31
AD4
A
1296 1298Right-handed 310
Helix 32
AD5
A
1299 1304Right-handed alpha
Helix 33
AD6
A
1309 1337Right-handed alpha
Helix 34
AD7
A
1350 1373Right-handed alpha
Helix 35
AD8
A
1380 1401Right-handed alpha
Helix 36
AD9
A
1402 1406Right-handed 310
Helix 37
AE1
A
1410 1416Right-handed alpha
Helix 38
AE2
A
1418 1447Right-handed alpha
Helix 39
AE3
A
1449 1461Right-handed alpha
Helix 40
AE4
A
1462 1465Right-handed 310
Helix 41
AE5
B
71 99Right-handed alpha
Helix 42
AE6
B
109 114Right-handed alpha
Helix 43
AE7
B
186 191Right-handed alpha
Helix 44
AE8
B
194 199Right-handed alpha
Helix 45
AE9
B
204 210Right-handed alpha
Helix 46
AF1
B
232 237Right-handed alpha
Helix 47
AF2
B
266 272Right-handed 310
Helix 48
AF3
B
288 292Right-handed 310
Helix 49
AF4
B
308 315Right-handed alpha
Helix 50
AF5
B
350 354Right-handed 310
Helix 51
AF6
B
373 398Right-handed alpha
Helix 52
AF7
B
405 409Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 7KY7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1055 1057first strand
Strand 2
A
1112 1115parallel
Strand 3
A
1142 1145parallel
Strand 4
A
1027 1031parallel
Strand 5
A
708 712parallel
Strand 6
A
1168 1169parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
732 735first strand
Strand 2
A
718 729anti-parallel
Strand 3
A
1000 1010anti-parallel
Strand 4
A
952 957anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
826 827first strand
Strand 2
A
839 840anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
870 872first strand
Strand 2
A
875 877anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1188 1190first strand
Strand 2
A
1204 1206parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1377 1378first strand
Strand 2
B
65 66anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 129first strand
Strand 2
B
102 106anti-parallel
Strand 3
B
356 362anti-parallel
Strand 4
B
173 180anti-parallel
Strand 5
B
323 330anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 120first strand
Strand 2
B
141 145anti-parallel
Strand 3
B
158 165anti-parallel
Strand 4
B
338 344anti-parallel
Strand 5
B
246 249anti-parallel
Strand 6
B
257 258anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il