Analysis of interatomic Contacts of Structural Units in PDB entry:
7KY8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7KY8 entry

There are 2 chains in PDB entry 7KY8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 279PRO 1475
B
 ASN 50MET 413
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 7KY8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
283 299Right-handed alpha
Helix 2
AA2
A
589 616Right-handed alpha
Helix 3
AA3
A
618 622Right-handed 310
Helix 4
AA4
A
641 655Right-handed alpha
Helix 5
AA5
A
656 658Right-handed 310
Helix 6
AA6
A
661 679Right-handed alpha
Helix 7
AA7
A
680 682Right-handed 310
Helix 8
AA8
A
701 706Right-handed 310
Helix 9
AA9
A
739 750Right-handed alpha
Helix 10
AB1
A
754 779Right-handed alpha
Helix 11
AB2
A
793 802Right-handed alpha
Helix 12
AB3
A
806 822Right-handed alpha
Helix 13
AB4
A
843 857Right-handed alpha
Helix 14
AB5
A
918 925Right-handed alpha
Helix 15
AB6
A
934 949Right-handed alpha
Helix 16
AB7
A
962 977Right-handed alpha
Helix 17
AB8
A
982 995Right-handed alpha
Helix 18
AB9
A
1013 1024Right-handed alpha
Helix 19
AC1
A
1035 1046Right-handed alpha
Helix 20
AC2
A
1071 1088Right-handed alpha
Helix 21
AC3
A
1095 1103Right-handed alpha
Helix 22
AC4
A
1116 1124Right-handed alpha
Helix 23
AC5
A
1126 1137Right-handed alpha
Helix 24
AC6
A
1149 1163Right-handed alpha
Helix 25
AC7
A
1177 1183Right-handed alpha
Helix 26
AC8
A
1196 1201Right-handed alpha
Helix 27
AC9
A
1208 1210Right-handed 310
Helix 28
AD1
A
1211 1216Right-handed alpha
Helix 29
AD2
A
1218 1251Right-handed alpha
Helix 30
AD3
A
1252 1255Right-handed 310
Helix 31
AD4
A
1274 1283Right-handed alpha
Helix 32
AD5
A
1288 1295Right-handed alpha
Helix 33
AD6
A
1296 1303Right-handed 310
Helix 34
AD7
A
1309 1336Right-handed alpha
Helix 35
AD8
A
1350 1373Right-handed alpha
Helix 36
AD9
A
1380 1401Right-handed alpha
Helix 37
AE1
A
1402 1406Right-handed 310
Helix 38
AE2
A
1410 1416Right-handed alpha
Helix 39
AE3
A
1418 1442Right-handed alpha
Helix 40
AE4
A
1449 1461Right-handed alpha
Helix 41
AE5
B
71 74Right-handed 310
Helix 42
AE6
B
75 98Right-handed alpha
Helix 43
AE7
B
186 191Right-handed alpha
Helix 44
AE8
B
194 200Right-handed alpha
Helix 45
AE9
B
204 208Right-handed 310
Helix 46
AF1
B
234 238Right-handed 310
Helix 47
AF2
B
266 272Right-handed 310
Helix 48
AF3
B
286 290Right-handed 310
Helix 49
AF4
B
308 315Right-handed alpha
Helix 50
AF5
B
350 354Right-handed 310
Helix 51
AF6
B
372 399Right-handed alpha
Helix 52
AF7
B
405 409Right-handed 310
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There are 9 sheets in PDB entry 7KY8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
684 685first strand
Strand 2
A
690 691anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1055 1057first strand
Strand 2
A
1112 1115parallel
Strand 3
A
1142 1145parallel
Strand 4
A
1029 1031parallel
Strand 5
A
708 711parallel
Strand 6
A
1168 1169parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
732 734first strand
Strand 2
A
723 729anti-parallel
Strand 3
A
999 1007anti-parallel
Strand 4
A
952 961anti-parallel
Strand 5
A
910 917anti-parallel
Strand 6
A
893 900anti-parallel
Strand 7
A
881 885anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
858 860first strand
Strand 2
A
869 872anti-parallel
Strand 3
A
875 878anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1188 1190first strand
Strand 2
A
1204 1206parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1377 1378first strand
Strand 2
B
65 66anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 129first strand
Strand 2
B
102 106anti-parallel
Strand 3
B
356 362anti-parallel
Strand 4
B
173 180anti-parallel
Strand 5
B
323 330anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 120first strand
Strand 2
B
141 144anti-parallel
Strand 3
B
158 165anti-parallel
Strand 4
B
338 345anti-parallel
Strand 5
B
246 249anti-parallel
Strand 6
B
257 258anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
227 228first strand
Strand 2
B
283 284parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il