Analysis of interatomic Contacts of Structural Units in PDB entry:
7KYB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7KYB entry

There are 2 chains in PDB entry 7KYB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 205LYS 1439
B
 ASN 50LYS 414
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 7KYB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
206 216Right-handed alpha
Helix 2
AA2
A
217 232Right-handed alpha
Helix 3
AA3
A
241 243Right-handed 310
Helix 4
AA4
A
244 267Right-handed alpha
Helix 5
AA5
A
543 577Right-handed alpha
Helix 6
AA6
A
581 586Right-handed alpha
Helix 7
AA7
A
594 609Right-handed alpha
Helix 8
AA8
A
616 635Right-handed alpha
Helix 9
AA9
A
694 705Right-handed alpha
Helix 10
AB1
A
707 734Right-handed alpha
Helix 11
AB2
A
740 744Right-handed 310
Helix 12
AB3
A
748 757Right-handed alpha
Helix 13
AB4
A
760 777Right-handed alpha
Helix 14
AB5
A
798 812Right-handed alpha
Helix 15
AB6
A
873 880Right-handed alpha
Helix 16
AB7
A
891 907Right-handed alpha
Helix 17
AB8
A
919 935Right-handed alpha
Helix 18
AB9
A
939 952Right-handed alpha
Helix 19
AC1
A
970 981Right-handed alpha
Helix 20
AC2
A
992 1003Right-handed alpha
Helix 21
AC3
A
1018 1026Right-handed alpha
Helix 22
AC4
A
1031 1045Right-handed alpha
Helix 23
AC5
A
1050 1058Right-handed alpha
Helix 24
AC6
A
1074 1083Right-handed alpha
Helix 25
AC7
A
1083 1096Right-handed alpha
Helix 26
AC8
A
1106 1120Right-handed alpha
Helix 27
AC9
A
1131 1140Right-handed alpha
Helix 28
AD1
A
1167 1207Right-handed alpha
Helix 29
AD2
A
1208 1210Right-handed 310
Helix 30
AD3
A
1218 1228Right-handed alpha
Helix 31
AD4
A
1230 1241Right-handed alpha
Helix 32
AD5
A
1245 1252Right-handed alpha
Helix 33
AD6
A
1253 1255Right-handed 310
Helix 34
AD7
A
1256 1262Right-handed alpha
Helix 35
AD8
A
1267 1287Right-handed alpha
Helix 36
AD9
A
1287 1293Right-handed alpha
Helix 37
AE1
A
1307 1331Right-handed alpha
Helix 38
AE2
A
1336 1358Right-handed alpha
Helix 39
AE3
A
1367 1373Right-handed alpha
Helix 40
AE4
A
1375 1404Right-handed alpha
Helix 41
AE5
A
1406 1418Right-handed alpha
Helix 42
AE6
B
71 99Right-handed alpha
Helix 43
AE7
B
108 111Right-handed 310
Helix 44
AE8
B
188 192Right-handed 310
Helix 45
AE9
B
194 199Right-handed alpha
Helix 46
AF1
B
204 210Right-handed alpha
Helix 47
AF2
B
231 237Right-handed alpha
Helix 48
AF3
B
266 272Right-handed 310
Helix 49
AF4
B
308 315Right-handed alpha
Helix 50
AF5
B
372 399Right-handed alpha
Helix 51
AF6
B
409 414Right-handed alpha
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There are 7 sheets in PDB entry 7KYB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1011 1014first strand
Strand 2
A
1068 1073parallel
Strand 3
A
1099 1103parallel
Strand 4
A
984 988parallel
Strand 5
A
663 666parallel
Strand 6
A
1125 1129parallel
Strand 7
A
1143 1147parallel
Strand 8
A
1161 1163parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
687 689first strand
Strand 2
A
673 684anti-parallel
Strand 3
A
956 967anti-parallel
Strand 4
A
908 918anti-parallel
Strand 5
A
865 872anti-parallel
Strand 6
A
848 855anti-parallel
Strand 7
A
836 843anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
815 816first strand
Strand 2
A
824 827anti-parallel
Strand 3
A
830 833anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1334 1335first strand
Strand 2
B
65 66anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 129first strand
Strand 2
B
102 106anti-parallel
Strand 3
B
356 362anti-parallel
Strand 4
B
173 180anti-parallel
Strand 5
B
323 330anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 120first strand
Strand 2
B
141 144anti-parallel
Strand 3
B
159 165anti-parallel
Strand 4
B
338 344anti-parallel
Strand 5
B
246 249anti-parallel
Strand 6
B
257 258anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
227 228first strand
Strand 2
B
283 284parallel
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