Analysis of interatomic Contacts of Structural Units in PDB entry:
7KYD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7KYD entry

There is 1 chain in PDB entry 7KYD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2LYS 538
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 7KYD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 24Right-handed alpha
Helix 2
AA2
A
26 38Right-handed alpha
Helix 3
AA3
A
55 72Right-handed alpha
Helix 4
AA4
A
87 100Right-handed alpha
Helix 5
AA5
A
112 124Right-handed alpha
Helix 6
AA6
A
134 144Right-handed alpha
Helix 7
AA7
A
167 173Right-handed alpha
Helix 8
AA8
A
213 221Right-handed alpha
Helix 9
AA9
A
230 233Right-handed 310
Helix 10
AB1
A
244 257Right-handed alpha
Helix 11
AB2
A
268 279Right-handed alpha
Helix 12
AB3
A
287 297Right-handed alpha
Helix 13
AB4
A
298 303Right-handed 310
Helix 14
AB5
A
319 331Right-handed alpha
Helix 15
AB6
A
342 345Right-handed 310
Helix 16
AB7
A
403 410Right-handed alpha
Helix 17
AB8
A
437 439Right-handed 310
Helix 18
AB9
A
448 459Right-handed alpha
Helix 19
AC1
A
492 502Right-handed alpha
Helix 20
AC2
A
505 509Right-handed 310
Helix 21
AC3
A
529 537Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 7KYD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
10 12anti-parallel
Strand 3
A
368 373anti-parallel
Strand 4
A
387 393anti-parallel
Strand 5
A
415 424anti-parallel
Strand 6
A
411 412anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
10 12anti-parallel
Strand 3
A
368 373anti-parallel
Strand 4
A
387 393anti-parallel
Strand 5
A
415 424anti-parallel
Strand 6
A
430 435anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 54first strand
Strand 2
A
42 46anti-parallel
Strand 3
A
260 263parallel
Strand 4
A
235 238parallel
Strand 5
A
283 286parallel
Strand 6
A
310 313parallel
Strand 7
A
334 340parallel
Strand 8
A
347 350anti-parallel
Strand 9
A
363 364anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 106first strand
Strand 2
A
79 83parallel
Strand 3
A
127 130parallel
Strand 4
A
150 153parallel
Strand 5
A
164 166parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 199first strand
Strand 2
A
207 212anti-parallel
Strand 3
A
399 400anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
440 442first strand
Strand 2
A
445 447anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
462 472first strand
Strand 2
A
476 485anti-parallel
Strand 3
A
514 516parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il