Analysis of interatomic Contacts of Structural Units in PDB entry:
7KYQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7KYQ entry

There is 1 chain in PDB entry 7KYQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 59VAL 314
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 7KYQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
67 69Right-handed 310
Helix 2
AA2
A
70 82Right-handed alpha
Helix 3
AA3
A
88 99Right-handed alpha
Helix 4
AA4
A
139 155Right-handed alpha
Helix 5
AA5
A
160 170Right-handed alpha
Helix 6
AA6
A
188 190Right-handed 310
Helix 7
AA7
A
191 209Right-handed alpha
Helix 8
AA8
A
211 215Right-handed 310
Helix 9
AA9
A
253 258Right-handed alpha
Helix 10
AB1
A
300 313Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 7KYQ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 64first strand
Strand 2
A
104 109anti-parallel
Strand 3
A
124 132anti-parallel
Strand 4
A
176 183anti-parallel
Strand 5
A
218 226parallel
Strand 6
A
247 248anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 64first strand
Strand 2
A
104 109anti-parallel
Strand 3
A
124 132anti-parallel
Strand 4
A
176 183anti-parallel
Strand 5
A
218 226parallel
Strand 6
A
289 297anti-parallel
Strand 7
A
262 267anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il