Analysis of interatomic Contacts of Structural Units in PDB entry:
7KZZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7KZZ entry

There are 6 chains in PDB entry 7KZZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	VAL 11	VAL 291
E	SER 1	GLY 202
F	GLU 4	PRO 230
A	VAL 11	VAL 291
C	SER 1	GLY 202
D	GLU 4	PRO 230

There are 31 helices in PDB entry 7KZZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	13	33	Right-handed alpha
Helix 2	AA2	B	38	66	Right-handed alpha
Helix 3	AA3	B	77	80	Right-handed 310
Helix 4	AA4	B	81	106	Right-handed alpha
Helix 5	AA5	B	115	142	Right-handed alpha
Helix 6	AA6	B	150	174	Right-handed alpha
Helix 7	AA7	B	177	205	Right-handed alpha
Helix 8	AA8	B	214	224	Right-handed alpha
Helix 9	AA9	B	225	227	Right-handed 310
Helix 10	AB1	B	258	276	Right-handed alpha
Helix 11	AB2	E	80	84	Right-handed 310
Helix 12	AB3	E	123	128	Right-handed alpha
Helix 13	AB4	E	185	189	Right-handed alpha
Helix 14	AB5	F	65	68	Right-handed 310
Helix 15	AB6	F	77	79	Right-handed 310
Helix 16	AB7	F	170	175	Right-handed 310
Helix 17	AB8	A	13	30	Right-handed alpha
Helix 18	AB9	A	38	66	Right-handed alpha
Helix 19	AC1	A	79	106	Right-handed alpha
Helix 20	AC2	A	115	142	Right-handed alpha
Helix 21	AC3	A	150	170	Right-handed alpha
Helix 22	AC4	A	170	175	Right-handed alpha
Helix 23	AC5	A	177	205	Right-handed alpha
Helix 24	AC6	A	214	224	Right-handed alpha
Helix 25	AC7	A	225	227	Right-handed 310
Helix 26	AC8	A	258	276	Right-handed alpha
Helix 27	AC9	C	80	84	Right-handed 310
Helix 28	AD1	C	123	128	Right-handed alpha
Helix 29	AD2	C	185	189	Right-handed alpha
Helix 30	AD3	D	65	68	Right-handed 310
Helix 31	AD4	D	170	175	Right-handed 310

There are 27 sheets in PDB entry 7KZZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	234	first strand
Strand 2	B	244	254	anti-parallel
Strand 3	B	239	241	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	234	first strand
Strand 2	B	244	254	anti-parallel
Strand 3	B	281	289	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	8	first strand
Strand 2	E	21	26	anti-parallel
Strand 3	E	71	76	anti-parallel
Strand 4	E	63	68	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	13	first strand
Strand 2	E	104	107	parallel
Strand 3	E	85	88	anti-parallel
Strand 4	E	35	39	anti-parallel
Strand 5	E	47	50	anti-parallel
Strand 6	E	54	55	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	90	91	first strand
Strand 2	E	99	100	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	120	first strand
Strand 2	E	135	141	anti-parallel
Strand 3	E	175	180	anti-parallel
Strand 4	E	162	165	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	131	132	first strand
Strand 2	E	183	184	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	10	first strand
Strand 2	F	21	26	anti-parallel
Strand 3	F	81	86	anti-parallel
Strand 4	F	71	76	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	60	63	first strand
Strand 2	F	48	55	anti-parallel
Strand 3	F	37	42	anti-parallel
Strand 4	F	95	101	anti-parallel
Strand 5	F	125	127	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	106	107	first strand
Strand 2	F	113	114	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	137	141	first strand
Strand 2	F	155	162	anti-parallel
Strand 3	F	193	199	anti-parallel
Strand 4	F	180	182	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	137	141	first strand
Strand 2	F	155	162	anti-parallel
Strand 3	F	193	199	anti-parallel
Strand 4	F	186	187	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	213	215	first strand
Strand 2	F	224	226	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	234	first strand
Strand 2	A	244	254	anti-parallel
Strand 3	A	239	241	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	234	first strand
Strand 2	A	244	254	anti-parallel
Strand 3	A	281	289	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	8	first strand
Strand 2	C	21	26	anti-parallel
Strand 3	C	71	76	anti-parallel
Strand 4	C	63	68	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	39	first strand
Strand 2	C	86	88	anti-parallel
Strand 3	C	104	105	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	50	first strand
Strand 2	C	54	55	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	91	first strand
Strand 2	C	99	100	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	120	first strand
Strand 2	C	135	141	anti-parallel
Strand 3	C	175	180	anti-parallel
Strand 4	C	162	165	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	132	first strand
Strand 2	C	183	184	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	10	first strand
Strand 2	D	21	26	anti-parallel
Strand 3	D	81	86	anti-parallel
Strand 4	D	71	75	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	63	first strand
Strand 2	D	48	55	anti-parallel
Strand 3	D	37	42	anti-parallel
Strand 4	D	95	101	anti-parallel
Strand 5	D	125	127	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	106	107	first strand
Strand 2	D	113	114	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	137	141	first strand
Strand 2	D	155	162	anti-parallel
Strand 3	D	193	199	anti-parallel
Strand 4	D	180	182	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	137	141	first strand
Strand 2	D	155	162	anti-parallel
Strand 3	D	193	199	anti-parallel
Strand 4	D	186	187	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	213	215	first strand
Strand 2	D	224	226	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7KZZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7KZZ