Analysis of interatomic Contacts of Structural Units in PDB entry:
7L1E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7L1E entry

There are 4 chains in PDB entry 7L1E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 6CYS 237
A
 ASN 239THR 270
B
 ILE 4CYS 237
B
 ASN 239MET 272
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 7L1E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 25Right-handed 310
Helix 2
AA2
A
29 50Right-handed alpha
Helix 3
AA3
A
58 78Right-handed alpha
Helix 4
AA4
A
92 111Right-handed alpha
Helix 5
AA5
A
122 140Right-handed alpha
Helix 6
AA6
A
145 181Right-handed alpha
Helix 7
AA7
A
185 214Right-handed alpha
Helix 8
AA8
A
224 238Right-handed alpha
Helix 9
AA9
A
239 250Right-handed alpha
Helix 10
AB1
B
18 23Right-handed alpha
Helix 11
AB2
B
32 52Right-handed alpha
Helix 12
AB3
B
58 77Right-handed alpha
Helix 13
AB4
B
92 111Right-handed alpha
Helix 14
AB5
B
122 141Right-handed alpha
Helix 15
AB6
B
145 180Right-handed alpha
Helix 16
AB7
B
183 214Right-handed alpha
Helix 17
AB8
B
222 238Right-handed alpha
Helix 18
AB9
B
238 252Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 7L1E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 83first strand
Strand 2
A
89 91anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 117first strand
Strand 2
A
120 121anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 83first strand
Strand 2
B
89 91anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
265 266first strand
Strand 2
B
270 271anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il