Analysis of interatomic Contacts of Structural Units in PDB entry:
7L4F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7L4F entry

There are 8 chains in PDB entry 7L4F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 PRO 275ARG 624
C
 T 1 T 18
D
 A 1 T 9
D
 A 11 A 18
A
 PRO 275ARG 624
E
 T 1 T 18
G
 A 1 T 9
G
 A 11 T 17
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 38 helices in PDB entry 7L4F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
300 304Right-handed 310
Helix 2
AA2
B
320 329Right-handed alpha
Helix 3
AA3
B
340 342Right-handed 310
Helix 4
AA4
B
370 375Right-handed alpha
Helix 5
AA5
B
400 410Right-handed alpha
Helix 6
AA6
B
411 415Right-handed 310
Helix 7
AA7
B
421 436Right-handed alpha
Helix 8
AA8
B
449 458Right-handed alpha
Helix 9
AA9
B
470 480Right-handed alpha
Helix 10
AB1
B
483 492Right-handed alpha
Helix 11
AB2
B
493 495Right-handed 310
Helix 12
AB3
B
512 521Right-handed alpha
Helix 13
AB4
B
534 548Right-handed alpha
Helix 14
AB5
B
559 563Right-handed 310
Helix 15
AB6
B
564 576Right-handed alpha
Helix 16
AB7
B
599 603Right-handed 310
Helix 17
AB8
B
605 607Right-handed 310
Helix 18
AB9
B
608 624Right-handed alpha
Helix 19
AC1
A
300 304Right-handed 310
Helix 20
AC2
A
320 329Right-handed alpha
Helix 21
AC3
A
340 342Right-handed 310
Helix 22
AC4
A
370 375Right-handed alpha
Helix 23
AC5
A
376 379Right-handed 310
Helix 24
AC6
A
407 412Right-handed alpha
Helix 25
AC7
A
413 416Right-handed 310
Helix 26
AC8
A
421 436Right-handed alpha
Helix 27
AC9
A
449 458Right-handed alpha
Helix 28
AD1
A
470 480Right-handed alpha
Helix 29
AD2
A
483 492Right-handed alpha
Helix 30
AD3
A
493 498Right-handed 310
Helix 31
AD4
A
512 520Right-handed alpha
Helix 32
AD5
A
534 547Right-handed alpha
Helix 33
AD6
A
559 563Right-handed 310
Helix 34
AD7
A
564 576Right-handed alpha
Helix 35
AD8
A
587 591Right-handed 310
Helix 36
AD9
A
599 603Right-handed 310
Helix 37
AE1
A
605 607Right-handed 310
Helix 38
AE2
A
608 624Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 7L4F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
335 338first strand
Strand 2
B
348 353anti-parallel
Strand 3
B
308 314anti-parallel
Strand 4
B
580 584parallel
Strand 5
B
502 507parallel
Strand 6
B
525 531parallel
Strand 7
B
553 557parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
437 441first strand
Strand 2
B
444 447anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 338first strand
Strand 2
A
348 353anti-parallel
Strand 3
A
308 314anti-parallel
Strand 4
A
580 583parallel
Strand 5
A
502 507parallel
Strand 6
A
525 531parallel
Strand 7
A
553 557parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
437 439first strand
Strand 2
A
445 447anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il