Analysis of interatomic Contacts of Structural Units in PDB entry:
7L5J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7L5J entry

There are 6 chains in PDB entry 7L5J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 228	SER 532
B	ARG 228	GLY 531
L	GLN 1	ARG 210
W	VAL 2	ALA 221
X	GLN 1	ARG 210
Y	VAL 2	ALA 221

There are 10 helices in PDB entry 7L5J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	236	240	Right-handed 310
Helix 2	AA2	A	454	465	Right-handed alpha
Helix 3	AA3	B	236	240	Right-handed 310
Helix 4	AA4	B	454	465	Right-handed alpha
Helix 5	AA5	L	120	127	Right-handed alpha
Helix 6	AA6	L	181	186	Right-handed alpha
Helix 7	AA7	W	190	194	Right-handed 310
Helix 8	AA8	X	120	127	Right-handed alpha
Helix 9	AA9	X	181	186	Right-handed alpha
Helix 10	AB1	Y	190	194	Right-handed 310

There are 31 sheets in PDB entry 7L5J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	443	449	first strand
Strand 2	A	430	440	anti-parallel
Strand 3	A	251	254	anti-parallel
Strand 4	A	507	508	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	289	293	first strand
Strand 2	A	389	395	anti-parallel
Strand 3	A	337	341	anti-parallel
Strand 4	A	352	353	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	355	356	first strand
Strand 2	A	377	378	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	474	475	first strand
Strand 2	A	517	519	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	491	492	first strand
Strand 2	A	496	497	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	448	449	first strand
Strand 2	B	431	435	anti-parallel
Strand 3	B	251	254	anti-parallel
Strand 4	B	507	508	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	353	first strand
Strand 2	B	337	341	anti-parallel
Strand 3	B	389	395	anti-parallel
Strand 4	B	289	294	anti-parallel
Strand 5	B	305	307	anti-parallel
Strand 6	B	374	378	anti-parallel
Strand 7	B	355	356	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	474	475	first strand
Strand 2	B	517	519	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	490	491	first strand
Strand 2	B	497	498	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	20	25	anti-parallel
Strand 3	L	69	74	anti-parallel
Strand 4	L	61	65	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	105	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	52	53	first strand
Strand 2	L	45	48	anti-parallel
Strand 3	L	33	37	anti-parallel
Strand 4	L	84	89	anti-parallel
Strand 5	L	96	97	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	131	132	first strand
Strand 2	L	176	178	anti-parallel
Strand 3	L	158	160	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	143	146	first strand
Strand 2	L	194	197	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	148	149	first strand
Strand 2	L	152	153	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	3	5	first strand
Strand 2	W	17	25	anti-parallel
Strand 3	W	78	84	anti-parallel
Strand 4	W	68	73	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	11	12	first strand
Strand 2	W	113	117	parallel
Strand 3	W	92	97	anti-parallel
Strand 4	W	34	39	anti-parallel
Strand 5	W	45	51	anti-parallel
Strand 6	W	58	60	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	126	129	first strand
Strand 2	W	146	151	anti-parallel
Strand 3	W	181	183	anti-parallel
Strand 4	W	175	176	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	142	144	first strand
Strand 2	W	185	189	anti-parallel
Strand 3	W	169	171	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	157	160	first strand
Strand 2	W	200	205	anti-parallel
Strand 3	W	210	215	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	4	7	first strand
Strand 2	X	20	25	anti-parallel
Strand 3	X	69	74	anti-parallel
Strand 4	X	61	65	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	10	13	first strand
Strand 2	X	102	105	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	52	53	first strand
Strand 2	X	45	48	anti-parallel
Strand 3	X	33	37	anti-parallel
Strand 4	X	84	89	anti-parallel
Strand 5	X	96	97	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	131	132	first strand
Strand 2	X	176	178	anti-parallel
Strand 3	X	158	160	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	143	146	first strand
Strand 2	X	194	197	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	148	149	first strand
Strand 2	X	152	153	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	3	5	first strand
Strand 2	Y	17	25	anti-parallel
Strand 3	Y	78	84	anti-parallel
Strand 4	Y	68	73	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	11	12	first strand
Strand 2	Y	113	117	parallel
Strand 3	Y	92	97	anti-parallel
Strand 4	Y	34	39	anti-parallel
Strand 5	Y	45	51	anti-parallel
Strand 6	Y	58	60	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	126	129	first strand
Strand 2	Y	146	151	anti-parallel
Strand 3	Y	181	183	anti-parallel
Strand 4	Y	175	176	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	142	144	first strand
Strand 2	Y	185	189	anti-parallel
Strand 3	Y	169	171	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	157	160	first strand
Strand 2	Y	200	205	anti-parallel
Strand 3	Y	210	215	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7L5J

Analysis of interatomic Contacts of Structural Units in PDB entry:
7L5J