Analysis of interatomic Contacts of Structural Units in PDB entry:
7L78


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7L78 entry

There are 2 chains in PDB entry 7L78 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 36GLU 391
B
 SER 37GLU 391
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 7L78. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
51 53Right-handed 310
Helix 2
AA2
A
54 65Right-handed alpha
Helix 3
AA3
A
75 99Right-handed alpha
Helix 4
AA4
A
103 123Right-handed alpha
Helix 5
AA5
A
124 127Right-handed 310
Helix 6
AA6
A
141 153Right-handed alpha
Helix 7
AA7
A
170 186Right-handed alpha
Helix 8
AA8
A
202 217Right-handed alpha
Helix 9
AA9
A
218 220Right-handed 310
Helix 10
AB1
A
224 228Right-handed 310
Helix 11
AB2
A
238 243Right-handed alpha
Helix 12
AB3
A
247 263Right-handed alpha
Helix 13
AB4
A
286 295Right-handed alpha
Helix 14
AB5
A
296 298Right-handed 310
Helix 15
AB6
A
312 317Right-handed alpha
Helix 16
AB7
A
342 358Right-handed alpha
Helix 17
AB8
A
366 374Right-handed alpha
Helix 18
AB9
A
382 387Right-handed alpha
Helix 19
AC1
B
51 53Right-handed 310
Helix 20
AC2
B
54 65Right-handed alpha
Helix 21
AC3
B
75 97Right-handed alpha
Helix 22
AC4
B
103 123Right-handed alpha
Helix 23
AC5
B
124 127Right-handed 310
Helix 24
AC6
B
141 153Right-handed alpha
Helix 25
AC7
B
172 184Right-handed alpha
Helix 26
AC8
B
202 218Right-handed alpha
Helix 27
AC9
B
224 228Right-handed 310
Helix 28
AD1
B
238 243Right-handed alpha
Helix 29
AD2
B
247 263Right-handed alpha
Helix 30
AD3
B
286 295Right-handed alpha
Helix 31
AD4
B
296 298Right-handed 310
Helix 32
AD5
B
312 317Right-handed alpha
Helix 33
AD6
B
327 331Right-handed 310
Helix 34
AD7
B
342 359Right-handed alpha
Helix 35
AD8
B
366 374Right-handed alpha
Helix 36
AD9
B
382 387Right-handed alpha
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There are 4 sheets in PDB entry 7L78. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 135first strand
Strand 2
A
39 45parallel
Strand 3
A
156 161parallel
Strand 4
A
192 196parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 274first strand
Strand 2
A
229 235parallel
Strand 3
A
301 304parallel
Strand 4
A
333 335parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 135first strand
Strand 2
B
39 45parallel
Strand 3
B
156 161parallel
Strand 4
B
192 196parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
269 274first strand
Strand 2
B
229 235parallel
Strand 3
B
301 305parallel
Strand 4
B
333 335parallel
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