Analysis of interatomic Contacts of Structural Units in PDB entry:
7L7J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7L7J entry

There are 3 chains in PDB entry 7L7J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	MET 1	GLU 110
A	VAL 17	ILE 698
B	VAL 17	ILE 698

There are 56 helices in PDB entry 7L7J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	36	Right-handed alpha
Helix 2	AA2	A	40	42	Right-handed 310
Helix 3	AA3	A	43	66	Right-handed alpha
Helix 4	AA4	A	67	71	Right-handed 310
Helix 5	AA5	A	99	107	Right-handed alpha
Helix 6	AA6	A	113	122	Right-handed alpha
Helix 7	AA7	A	136	139	Right-handed 310
Helix 8	AA8	A	140	144	Right-handed alpha
Helix 9	AA9	A	194	198	Right-handed 310
Helix 10	AB1	A	199	211	Right-handed alpha
Helix 11	AB2	A	295	299	Right-handed 310
Helix 12	AB3	A	305	318	Right-handed alpha
Helix 13	AB4	A	379	383	Right-handed 310
Helix 14	AB5	A	405	428	Right-handed alpha
Helix 15	AB6	A	430	452	Right-handed alpha
Helix 16	AB7	A	455	460	Right-handed alpha
Helix 17	AB8	A	477	484	Right-handed alpha
Helix 18	AB9	A	498	504	Right-handed alpha
Helix 19	AC1	A	505	507	Right-handed 310
Helix 20	AC2	A	508	515	Right-handed alpha
Helix 21	AC3	A	524	533	Right-handed alpha
Helix 22	AC4	A	554	579	Right-handed alpha
Helix 23	AC5	A	607	615	Right-handed alpha
Helix 24	AC6	A	621	626	Right-handed alpha
Helix 25	AC7	A	627	629	Right-handed 310
Helix 26	AC8	A	640	653	Right-handed alpha
Helix 27	AC9	A	656	674	Right-handed alpha
Helix 28	AD1	A	680	697	Right-handed alpha
Helix 29	AD2	B	25	36	Right-handed alpha
Helix 30	AD3	B	40	42	Right-handed 310
Helix 31	AD4	B	43	65	Right-handed alpha
Helix 32	AD5	B	66	71	Right-handed 310
Helix 33	AD6	B	99	107	Right-handed alpha
Helix 34	AD7	B	113	120	Right-handed alpha
Helix 35	AD8	B	136	143	Right-handed 310
Helix 36	AD9	B	192	198	Right-handed 310
Helix 37	AE1	B	199	212	Right-handed alpha
Helix 38	AE2	B	295	299	Right-handed 310
Helix 39	AE3	B	305	318	Right-handed alpha
Helix 40	AE4	B	379	383	Right-handed 310
Helix 41	AE5	B	406	428	Right-handed alpha
Helix 42	AE6	B	430	452	Right-handed alpha
Helix 43	AE7	B	455	461	Right-handed alpha
Helix 44	AE8	B	477	484	Right-handed alpha
Helix 45	AE9	B	498	504	Right-handed alpha
Helix 46	AF1	B	505	507	Right-handed 310
Helix 47	AF2	B	508	515	Right-handed alpha
Helix 48	AF3	B	524	531	Right-handed alpha
Helix 49	AF4	B	554	568	Right-handed alpha
Helix 50	AF5	B	568	579	Right-handed alpha
Helix 51	AF6	B	607	615	Right-handed alpha
Helix 52	AF7	B	621	623	Right-handed 310
Helix 53	AF8	B	624	629	Right-handed alpha
Helix 54	AF9	B	640	653	Right-handed alpha
Helix 55	AG1	B	656	674	Right-handed alpha
Helix 56	AG2	B	680	697	Right-handed alpha

There are 12 sheets in PDB entry 7L7J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	68	first strand
Strand 2	C	73	78	anti-parallel
Strand 3	C	14	19	anti-parallel
Strand 4	C	6	10	anti-parallel
Strand 5	C	99	101	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	32	first strand
Strand 2	C	35	41	anti-parallel
Strand 3	C	48	54	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	21	first strand
Strand 2	B	169	174	anti-parallel
Strand 3	B	159	164	anti-parallel
Strand 4	B	145	153	anti-parallel
Strand 5	B	183	190	anti-parallel
Strand 6	B	88	93	anti-parallel
Strand 7	B	78	83	anti-parallel
Strand 8	B	218	221	parallel
Strand 9	B	286	287	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	24	first strand
Strand 2	B	109	110	parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	285	287	first strand
Strand 2	A	218	222	anti-parallel
Strand 3	A	78	82	parallel
Strand 4	A	88	93	anti-parallel
Strand 5	A	183	190	anti-parallel
Strand 6	A	145	153	anti-parallel
Strand 7	A	160	164	anti-parallel
Strand 8	A	169	174	anti-parallel
Strand 9	B	18	21	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	110	first strand
Strand 2	B	23	24	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	331	first strand
Strand 2	A	337	343	anti-parallel
Strand 3	A	386	391	anti-parallel
Strand 4	A	360	365	parallel
Strand 5	A	368	372	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	475	476	first strand
Strand 2	A	464	467	anti-parallel
Strand 3	A	519	521	anti-parallel
Strand 4	A	490	495	parallel
Strand 5	A	539	543	parallel
Strand 6	A	535	536	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	585	588	first strand
Strand 2	A	632	636	parallel
Strand 3	A	597	601	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	323	331	first strand
Strand 2	B	337	344	anti-parallel
Strand 3	B	386	391	anti-parallel
Strand 4	B	361	365	parallel
Strand 5	B	368	371	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	476	first strand
Strand 2	B	464	467	anti-parallel
Strand 3	B	518	521	anti-parallel
Strand 4	B	490	495	parallel
Strand 5	B	539	543	parallel
Strand 6	B	535	536	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	585	588	first strand
Strand 2	B	632	636	parallel
Strand 3	B	597	601	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7L7J

Analysis of interatomic Contacts of Structural Units in PDB entry:
7L7J