Analysis of interatomic Contacts of Structural Units in PDB entry:
7L88

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7L88 entry

There are 8 chains in PDB entry 7L88 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	ASN 33	ARG 503
F	SER 519	ASP 664
A	ASN 33	ARG 503
B	SER 519	ASP 664
C	ASN 33	ARG 503
E	SER 519	ASP 664
H	UNK 3	UNK 116
L	UNK 3	UNK 109

There are 41 helices in PDB entry 7L88. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	70	74	Right-handed 310
Helix 2	AA2	D	94	98	Right-handed 310
Helix 3	AA3	D	99	115	Right-handed alpha
Helix 4	AA4	D	122	126	Right-handed 310
Helix 5	AA5	D	195	198	Right-handed 310
Helix 6	AA6	D	335	354	Right-handed alpha
Helix 7	AA7	D	368	373	Right-handed alpha
Helix 8	AA8	D	475	484	Right-handed alpha
Helix 9	AA9	F	531	535	Right-handed 310
Helix 10	AB1	F	536	542	Right-handed alpha
Helix 11	AB2	F	570	596	Right-handed alpha
Helix 12	AB3	F	618	625	Right-handed alpha
Helix 13	AB4	F	627	635	Right-handed alpha
Helix 14	AB5	F	638	664	Right-handed alpha
Helix 15	AB6	A	94	97	Right-handed 310
Helix 16	AB7	A	98	117	Right-handed alpha
Helix 17	AB8	A	122	126	Right-handed 310
Helix 18	AB9	A	195	198	Right-handed 310
Helix 19	AC1	A	335	350	Right-handed alpha
Helix 20	AC2	A	351	353	Right-handed 310
Helix 21	AC3	A	368	373	Right-handed alpha
Helix 22	AC4	A	425	429	Right-handed 310
Helix 23	AC5	A	475	483	Right-handed alpha
Helix 24	AC6	B	529	534	Right-handed alpha
Helix 25	AC7	B	537	542	Right-handed alpha
Helix 26	AC8	B	570	597	Right-handed alpha
Helix 27	AC9	B	619	626	Right-handed alpha
Helix 28	AD1	B	627	635	Right-handed alpha
Helix 29	AD2	B	638	663	Right-handed alpha
Helix 30	AD3	C	70	74	Right-handed 310
Helix 31	AD4	C	98	117	Right-handed alpha
Helix 32	AD5	C	122	126	Right-handed 310
Helix 33	AD6	C	335	354	Right-handed alpha
Helix 34	AD7	C	368	373	Right-handed alpha
Helix 35	AD8	C	478	482	Right-handed 310
Helix 36	AD9	E	529	534	Right-handed alpha
Helix 37	AE1	E	536	542	Right-handed alpha
Helix 38	AE2	E	570	596	Right-handed alpha
Helix 39	AE3	E	618	624	Right-handed alpha
Helix 40	AE4	E	627	635	Right-handed alpha
Helix 41	AE5	E	638	664	Right-handed alpha

There are 38 sheets in PDB entry 7L88. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	494	499	first strand
Strand 2	D	35	40	anti-parallel
Strand 3	F	603	609	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	47	first strand
Strand 2	D	486	491	anti-parallel
Strand 3	D	223	228	anti-parallel
Strand 4	D	242	245	anti-parallel
Strand 5	D	83	86	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	54	first strand
Strand 2	D	217	218	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	92	first strand
Strand 2	D	238	239	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	176	first strand
Strand 2	D	155	162	anti-parallel
Strand 3	D	129	133	anti-parallel
Strand 4	D	190	193	anti-parallel
Strand 5	D	181	183	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	200	203	first strand
Strand 2	D	432	435	parallel
Strand 3	D	423	424	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	256	257	first strand
Strand 2	D	374	378	anti-parallel
Strand 3	D	381	385	anti-parallel
Strand 4	D	413	420	anti-parallel
Strand 5	D	329	334	anti-parallel
Strand 6	D	284	312	anti-parallel
Strand 7	D	441	456	anti-parallel
Strand 8	D	259	261	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	315	323	first strand
Strand 2	D	284	312	anti-parallel
Strand 3	D	271	273	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	393	396	first strand
Strand 2	D	358	361	anti-parallel
Strand 3	D	465	470	parallel
Strand 4	D	441	456	anti-parallel
Strand 5	D	259	261	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	271	273	first strand
Strand 2	D	284	312	anti-parallel
Strand 3	D	329	334	anti-parallel
Strand 4	D	413	420	anti-parallel
Strand 5	D	381	385	anti-parallel
Strand 6	D	374	378	anti-parallel
Strand 7	D	256	257	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	315	323	first strand
Strand 2	D	284	312	anti-parallel
Strand 3	D	441	456	anti-parallel
Strand 4	D	259	261	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	494	499	first strand
Strand 2	A	35	40	anti-parallel
Strand 3	B	603	609	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	486	491	anti-parallel
Strand 3	A	223	228	anti-parallel
Strand 4	A	242	245	anti-parallel
Strand 5	A	83	86	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	217	218	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	92	first strand
Strand 2	A	238	239	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	176	first strand
Strand 2	A	155	162	anti-parallel
Strand 3	A	129	133	anti-parallel
Strand 4	A	190	193	anti-parallel
Strand 5	A	181	183	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	203	first strand
Strand 2	A	432	435	parallel
Strand 3	A	423	424	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	374	378	first strand
Strand 2	A	381	385	anti-parallel
Strand 3	A	413	420	anti-parallel
Strand 4	A	329	334	anti-parallel
Strand 5	A	284	312	anti-parallel
Strand 6	A	441	456	anti-parallel
Strand 7	A	259	261	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	315	323	first strand
Strand 2	A	284	312	anti-parallel
Strand 3	A	441	456	anti-parallel
Strand 4	A	467	470	anti-parallel
Strand 5	A	359	361	parallel
Strand 6	A	393	395	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	261	first strand
Strand 2	A	441	456	anti-parallel
Strand 3	A	284	312	anti-parallel
Strand 4	A	271	273	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	374	378	first strand
Strand 2	A	381	385	anti-parallel
Strand 3	A	413	420	anti-parallel
Strand 4	A	329	334	anti-parallel
Strand 5	A	284	312	anti-parallel
Strand 6	A	315	323	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	315	323	first strand
Strand 2	A	284	312	anti-parallel
Strand 3	A	271	273	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	273	first strand
Strand 2	A	284	312	anti-parallel
Strand 3	A	441	456	anti-parallel
Strand 4	A	467	470	anti-parallel
Strand 5	A	359	361	parallel
Strand 6	A	393	395	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	494	499	first strand
Strand 2	C	35	40	anti-parallel
Strand 3	E	603	609	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	47	first strand
Strand 2	C	486	491	anti-parallel
Strand 3	C	223	228	anti-parallel
Strand 4	C	242	245	anti-parallel
Strand 5	C	83	86	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	217	218	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	92	first strand
Strand 2	C	238	239	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	176	first strand
Strand 2	C	155	162	anti-parallel
Strand 3	C	129	132	anti-parallel
Strand 4	C	190	193	anti-parallel
Strand 5	C	181	183	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	201	203	first strand
Strand 2	C	433	435	parallel
Strand 3	C	423	424	anti-parallel

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There are 7 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	374	378	first strand
Strand 2	C	381	385	anti-parallel
Strand 3	C	413	420	anti-parallel
Strand 4	C	329	334	anti-parallel
Strand 5	C	284	312	anti-parallel
Strand 6	C	441	456	anti-parallel
Strand 7	C	259	261	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	315	323	first strand
Strand 2	C	284	312	anti-parallel
Strand 3	C	441	456	anti-parallel
Strand 4	C	465	470	anti-parallel
Strand 5	C	358	361	parallel
Strand 6	C	393	396	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	261	first strand
Strand 2	C	441	456	anti-parallel
Strand 3	C	284	312	anti-parallel
Strand 4	C	271	274	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	374	378	first strand
Strand 2	C	381	385	anti-parallel
Strand 3	C	413	420	anti-parallel
Strand 4	C	329	334	anti-parallel
Strand 5	C	284	312	anti-parallel
Strand 6	C	315	323	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	315	323	first strand
Strand 2	C	284	312	anti-parallel
Strand 3	C	271	274	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	274	first strand
Strand 2	C	284	312	anti-parallel
Strand 3	C	441	456	anti-parallel
Strand 4	C	465	470	anti-parallel
Strand 5	C	358	361	parallel
Strand 6	C	393	396	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	50	51	first strand
Strand 2	H	34	36	anti-parallel
Strand 3	H	91	95	anti-parallel
Strand 4	H	110	113	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	21	23	first strand
Strand 2	L	4	6	anti-parallel
Strand 3	L	101	102	parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	12	first strand
Strand 2	L	105	107	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7L88

Analysis of interatomic Contacts of Structural Units in PDB entry:
7L88