Analysis of interatomic Contacts of Structural Units in PDB entry:
7L9P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7L9P entry

There are 7 chains in PDB entry 7L9P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 122	ALA 429
B	PRO 19	ALA 429
C	PRO 19	ALA 429
D	PRO 19	ALA 429
E	PRO 19	ALA 429
F	ALA 122	GLU 424
G	VAL 15	VAL 15

There are105 helices in PDB entry 7L9P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	144	163	Right-handed alpha
Helix 2	AA2	A	184	200	Right-handed alpha
Helix 3	AA3	A	214	218	Right-handed 310
Helix 4	AA4	A	221	242	Right-handed alpha
Helix 5	AA5	A	254	263	Right-handed alpha
Helix 6	AA6	A	269	288	Right-handed alpha
Helix 7	AA7	A	323	341	Right-handed alpha
Helix 8	AA8	A	352	360	Right-handed alpha
Helix 9	AA9	A	368	380	Right-handed alpha
Helix 10	AB1	A	386	400	Right-handed alpha
Helix 11	AB2	A	406	428	Right-handed alpha
Helix 12	AB3	B	34	50	Right-handed alpha
Helix 13	AB4	B	63	69	Right-handed alpha
Helix 14	AB5	B	129	133	Right-handed 310
Helix 15	AB6	B	134	139	Right-handed alpha
Helix 16	AB7	B	145	162	Right-handed alpha
Helix 17	AB8	B	184	200	Right-handed alpha
Helix 18	AB9	B	201	203	Right-handed 310
Helix 19	AC1	B	213	217	Right-handed 310
Helix 20	AC2	B	223	241	Right-handed alpha
Helix 21	AC3	B	253	257	Right-handed 310
Helix 22	AC4	B	262	266	Right-handed 310
Helix 23	AC5	B	270	274	Right-handed 310
Helix 24	AC6	B	276	288	Right-handed alpha
Helix 25	AC7	B	323	341	Right-handed alpha
Helix 26	AC8	B	352	359	Right-handed alpha
Helix 27	AC9	B	367	380	Right-handed alpha
Helix 28	AD1	B	386	401	Right-handed alpha
Helix 29	AD2	B	406	428	Right-handed alpha
Helix 30	AD3	C	34	50	Right-handed alpha
Helix 31	AD4	C	63	69	Right-handed alpha
Helix 32	AD5	C	134	139	Right-handed alpha
Helix 33	AD6	C	144	162	Right-handed alpha
Helix 34	AD7	C	191	200	Right-handed alpha
Helix 35	AD8	C	213	218	Right-handed alpha
Helix 36	AD9	C	228	241	Right-handed alpha
Helix 37	AE1	C	253	257	Right-handed 310
Helix 38	AE2	C	271	276	Right-handed alpha
Helix 39	AE3	C	276	281	Right-handed alpha
Helix 40	AE4	C	301	305	Right-handed 310
Helix 41	AE5	C	323	342	Right-handed alpha
Helix 42	AE6	C	352	360	Right-handed alpha
Helix 43	AE7	C	366	380	Right-handed alpha
Helix 44	AE8	C	384	398	Right-handed alpha
Helix 45	AE9	C	406	427	Right-handed alpha
Helix 46	AF1	D	35	50	Right-handed alpha
Helix 47	AF2	D	63	70	Right-handed alpha
Helix 48	AF3	D	134	139	Right-handed alpha
Helix 49	AF4	D	143	161	Right-handed alpha
Helix 50	AF5	D	186	200	Right-handed alpha
Helix 51	AF6	D	225	241	Right-handed alpha
Helix 52	AF7	D	253	257	Right-handed 310
Helix 53	AF8	D	271	287	Right-handed alpha
Helix 54	AF9	D	306	311	Right-handed alpha
Helix 55	AG1	D	323	341	Right-handed alpha
Helix 56	AG2	D	352	359	Right-handed alpha
Helix 57	AG3	D	364	380	Right-handed alpha
Helix 58	AG4	D	384	389	Right-handed alpha
Helix 59	AG5	D	390	395	Right-handed alpha
Helix 60	AG6	D	410	428	Right-handed alpha
Helix 61	AG7	E	34	50	Right-handed alpha
Helix 62	AG8	E	63	70	Right-handed alpha
Helix 63	AG9	E	129	133	Right-handed 310
Helix 64	AH1	E	134	139	Right-handed alpha
Helix 65	AH2	E	144	162	Right-handed alpha
Helix 66	AH3	E	186	200	Right-handed alpha
Helix 67	AH4	E	224	242	Right-handed alpha
Helix 68	AH5	E	253	258	Right-handed alpha
Helix 69	AH6	E	271	276	Right-handed alpha
Helix 70	AH7	E	282	288	Right-handed alpha
Helix 71	AH8	E	323	341	Right-handed alpha
Helix 72	AH9	E	352	360	Right-handed alpha
Helix 73	AI1	E	367	380	Right-handed alpha
Helix 74	AI2	E	384	396	Right-handed alpha
Helix 75	AI3	E	409	428	Right-handed alpha
Helix 76	AI4	F	135	139	Right-handed 310
Helix 77	AI5	F	147	162	Right-handed alpha
Helix 78	AI6	F	184	199	Right-handed alpha
Helix 79	AI7	F	230	239	Right-handed alpha
Helix 80	AI8	F	280	288	Right-handed alpha
Helix 81	AI9	F	306	311	Right-handed alpha
Helix 82	AJ1	F	323	341	Right-handed alpha
Helix 83	AJ2	F	352	360	Right-handed alpha
Helix 84	AJ3	F	368	376	Right-handed alpha
Helix 85	AJ4	F	379	383	Right-handed 310
Helix 86	AJ5	F	384	399	Right-handed alpha
Helix 87	AJ6	F	407	424	Right-handed alpha
Helix 88	AJ7	G	16	34	Right-handed alpha
Helix 89	AJ8	G	38	42	Right-handed 310
Helix 90	AJ9	G	57	78	Right-handed alpha
Helix 91	AK1	G	118	132	Right-handed alpha
Helix 92	AK2	G	156	164	Right-handed alpha
Helix 93	AK3	I	14	34	Right-handed alpha
Helix 94	AK4	I	57	68	Right-handed alpha
Helix 95	AK5	I	118	134	Right-handed alpha
Helix 96	AK6	I	159	164	Right-handed alpha
Helix 97	AK7	J	16	35	Right-handed alpha
Helix 98	AK8	J	57	72	Right-handed alpha
Helix 99	AK9	J	120	137	Right-handed alpha
Helix 100	AL1	K	16	33	Right-handed alpha
Helix 101	AL2	K	57	77	Right-handed alpha
Helix 102	AL3	K	120	137	Right-handed alpha
Helix 103	AL4	Y	50	59	Right-handed alpha
Helix 104	AL5	X	41	45	Right-handed 310
Helix 105	AL6	X	50	59	Right-handed alpha

There are 20 sheets in PDB entry 7L9P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	125	first strand
Strand 2	A	207	211	anti-parallel
Strand 3	A	246	253	parallel
Strand 4	A	293	298	parallel
Strand 5	A	174	178	parallel
Strand 6	A	315	318	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	58	first strand
Strand 2	B	70	76	anti-parallel
Strand 3	B	21	27	anti-parallel
Strand 4	B	95	100	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	110	first strand
Strand 2	B	122	124	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	210	211	first strand
Strand 2	B	248	251	parallel
Strand 3	B	294	299	parallel
Strand 4	B	175	178	parallel
Strand 5	B	316	318	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	59	first strand
Strand 2	C	70	76	anti-parallel
Strand 3	C	22	27	anti-parallel
Strand 4	C	98	100	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	125	first strand
Strand 2	C	209	212	anti-parallel
Strand 3	C	248	251	parallel
Strand 4	C	294	298	parallel
Strand 5	C	175	178	parallel
Strand 6	C	317	318	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	58	first strand
Strand 2	D	72	76	anti-parallel
Strand 3	D	21	27	anti-parallel
Strand 4	D	95	101	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	123	125	first strand
Strand 2	D	206	212	anti-parallel
Strand 3	D	245	251	parallel
Strand 4	D	293	300	parallel
Strand 5	D	174	179	parallel
Strand 6	D	315	318	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	57	58	first strand
Strand 2	E	72	76	anti-parallel
Strand 3	E	21	26	anti-parallel
Strand 4	E	95	100	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	108	110	first strand
Strand 2	E	122	127	anti-parallel
Strand 3	E	207	212	anti-parallel
Strand 4	E	246	252	parallel
Strand 5	E	293	299	parallel
Strand 6	E	174	178	parallel
Strand 7	E	315	318	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	206	212	first strand
Strand 2	F	245	252	parallel
Strand 3	F	293	298	parallel
Strand 4	F	174	178	parallel
Strand 5	F	315	318	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	344	345	first strand
Strand 2	F	405	406	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	43	47	first strand
Strand 2	G	50	54	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	146	152	first strand
Strand 2	G	80	87	anti-parallel
Strand 3	G	96	103	anti-parallel
Strand 4	G	198	205	anti-parallel
Strand 5	G	190	193	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	171	173	first strand
Strand 2	X	82	84	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	42	44	first strand
Strand 2	I	53	55	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	171	172	first strand
Strand 2	Y	81	84	anti-parallel
Strand 3	I	145	151	anti-parallel
Strand 4	I	82	88	anti-parallel
Strand 5	I	94	102	anti-parallel
Strand 6	I	199	205	anti-parallel
Strand 7	I	185	187	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	146	151	first strand
Strand 2	J	82	87	anti-parallel
Strand 3	J	96	100	anti-parallel
Strand 4	J	202	205	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	42	47	first strand
Strand 2	K	50	55	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	85	86	first strand
Strand 2	K	147	151	anti-parallel
Strand 3	X	4	6	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7L9P

Analysis of interatomic Contacts of Structural Units in PDB entry:
7L9P