Analysis of interatomic Contacts of Structural Units in PDB entry:
7LAP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7LAP entry

There are 2 chains in PDB entry 7LAP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP -1ASP 283
B
 ASP -2ASP 283
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 7LAP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-1 11Right-handed alpha
Helix 2
AA2
A
15 27Right-handed alpha
Helix 3
AA3
A
39 44Right-handed alpha
Helix 4
AA4
A
48 62Right-handed alpha
Helix 5
AA5
A
80 84Right-handed 310
Helix 6
AA6
A
85 96Right-handed alpha
Helix 7
AA7
A
107 110Right-handed 310
Helix 8
AA8
A
111 120Right-handed alpha
Helix 9
AA9
A
139 145Right-handed alpha
Helix 10
AB1
A
157 165Right-handed alpha
Helix 11
AB2
A
175 179Right-handed 310
Helix 12
AB3
A
180 189Right-handed alpha
Helix 13
AB4
A
235 247Right-handed alpha
Helix 14
AB5
A
265 282Right-handed alpha
Helix 15
AB6
B
-1 11Right-handed alpha
Helix 16
AB7
B
15 27Right-handed alpha
Helix 17
AB8
B
39 44Right-handed alpha
Helix 18
AB9
B
49 62Right-handed alpha
Helix 19
AC1
B
80 84Right-handed 310
Helix 20
AC2
B
85 96Right-handed alpha
Helix 21
AC3
B
107 110Right-handed 310
Helix 22
AC4
B
111 119Right-handed alpha
Helix 23
AC5
B
139 145Right-handed alpha
Helix 24
AC6
B
157 165Right-handed alpha
Helix 25
AC7
B
175 179Right-handed 310
Helix 26
AC8
B
180 189Right-handed alpha
Helix 27
AC9
B
235 247Right-handed alpha
Helix 28
AD1
B
265 282Right-handed alpha
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There are 4 sheets in PDB entry 7LAP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 125first strand
Strand 2
A
133 137anti-parallel
Strand 3
A
66 70anti-parallel
Strand 4
A
33 38parallel
Strand 5
A
168 172parallel
Strand 6
A
258 264anti-parallel
Strand 7
A
251 255anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 205first strand
Strand 2
A
208 217anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 125first strand
Strand 2
B
133 137anti-parallel
Strand 3
B
66 70anti-parallel
Strand 4
B
33 38parallel
Strand 5
B
168 172parallel
Strand 6
B
258 264anti-parallel
Strand 7
B
251 255anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 205first strand
Strand 2
B
208 217anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il