Analysis of interatomic Contacts of Structural Units in PDB entry:
7LB8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7LB8 entry

There are 4 chains in PDB entry 7LB8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ALA 6	SER 659
D	ALA 32	ALA 296
U	THR 11	TYR 265
C	THR 11	TYR 265

There are 66 helices in PDB entry 7LB8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	6	32	Right-handed alpha
Helix 2	AA2	B	33	35	Right-handed 310
Helix 3	AA3	B	36	42	Right-handed alpha
Helix 4	AA4	B	49	54	Right-handed alpha
Helix 5	AA5	B	54	83	Right-handed alpha
Helix 6	AA6	B	94	108	Right-handed alpha
Helix 7	AA7	B	114	134	Right-handed alpha
Helix 8	AA8	B	142	168	Right-handed alpha
Helix 9	AA9	B	172	179	Right-handed alpha
Helix 10	AB1	B	188	207	Right-handed alpha
Helix 11	AB2	B	208	217	Right-handed alpha
Helix 12	AB3	B	218	225	Right-handed alpha
Helix 13	AB4	B	228	251	Right-handed alpha
Helix 14	AB5	B	256	259	Right-handed 310
Helix 15	AB6	B	260	269	Right-handed alpha
Helix 16	AB7	B	272	302	Right-handed alpha
Helix 17	AB8	B	307	323	Right-handed alpha
Helix 18	AB9	B	349	370	Right-handed alpha
Helix 19	AC1	B	380	387	Right-handed alpha
Helix 20	AC2	B	390	416	Right-handed alpha
Helix 21	AC3	B	421	425	Right-handed 310
Helix 22	AC4	B	426	442	Right-handed alpha
Helix 23	AC5	B	454	473	Right-handed alpha
Helix 24	AC6	B	475	500	Right-handed alpha
Helix 25	AC7	B	504	513	Right-handed alpha
Helix 26	AC8	B	520	538	Right-handed alpha
Helix 27	AC9	B	541	548	Right-handed alpha
Helix 28	AD1	B	552	559	Right-handed alpha
Helix 29	AD2	B	561	584	Right-handed alpha
Helix 30	AD3	B	588	602	Right-handed alpha
Helix 31	AD4	B	605	631	Right-handed alpha
Helix 32	AD5	B	638	658	Right-handed alpha
Helix 33	AD6	D	34	36	Right-handed 310
Helix 34	AD7	D	42	53	Right-handed alpha
Helix 35	AD8	D	61	69	Right-handed alpha
Helix 36	AD9	D	88	95	Right-handed alpha
Helix 37	AE1	D	109	115	Right-handed alpha
Helix 38	AE2	D	129	146	Right-handed alpha
Helix 39	AE3	D	147	165	Right-handed alpha
Helix 40	AE4	D	166	170	Right-handed 310
Helix 41	AE5	D	197	204	Right-handed alpha
Helix 42	AE6	D	225	230	Right-handed 310
Helix 43	AE7	D	242	251	Right-handed alpha
Helix 44	AE8	D	252	257	Right-handed alpha
Helix 45	AE9	D	258	263	Right-handed alpha
Helix 46	AF1	D	277	293	Right-handed alpha
Helix 47	AF2	U	49	58	Right-handed alpha
Helix 48	AF3	U	79	86	Right-handed alpha
Helix 49	AF4	U	101	109	Right-handed alpha
Helix 50	AF5	U	110	115	Right-handed alpha
Helix 51	AF6	U	124	135	Right-handed alpha
Helix 52	AF7	U	149	164	Right-handed alpha
Helix 53	AF8	U	179	198	Right-handed alpha
Helix 54	AF9	U	207	214	Right-handed alpha
Helix 55	AG1	U	236	246	Right-handed alpha
Helix 56	AG2	C	46	48	Right-handed 310
Helix 57	AG3	C	49	58	Right-handed alpha
Helix 58	AG4	C	79	84	Right-handed alpha
Helix 59	AG5	C	104	110	Right-handed alpha
Helix 60	AG6	C	110	115	Right-handed alpha
Helix 61	AG7	C	125	135	Right-handed alpha
Helix 62	AG8	C	149	165	Right-handed alpha
Helix 63	AG9	C	179	197	Right-handed alpha
Helix 64	AH1	C	207	213	Right-handed alpha
Helix 65	AH2	C	231	236	Right-handed alpha
Helix 66	AH3	C	237	246	Right-handed alpha

There are 8 sheets in PDB entry 7LB8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	79	80	first strand
Strand 2	D	58	59	parallel
Strand 3	D	38	40	parallel
Strand 4	D	99	103	parallel
Strand 5	D	121	122	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	220	223	first strand
Strand 2	D	187	190	anti-parallel
Strand 3	D	177	184	anti-parallel
Strand 4	D	234	239	parallel
Strand 5	D	267	270	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	30	33	first strand
Strand 2	U	12	16	anti-parallel
Strand 3	U	68	70	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	87	89	first strand
Strand 2	U	168	171	parallel
Strand 3	U	200	204	parallel
Strand 4	U	39	43	parallel
Strand 5	U	217	220	parallel
Strand 6	U	228	230	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	250	252	first strand
Strand 2	U	261	263	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	33	first strand
Strand 2	C	13	14	anti-parallel
Strand 3	C	68	69	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	90	first strand
Strand 2	C	168	172	parallel
Strand 3	C	200	204	parallel
Strand 4	C	39	44	parallel
Strand 5	C	219	222	parallel
Strand 6	C	225	226	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	249	252	first strand
Strand 2	C	261	264	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7LB8

Analysis of interatomic Contacts of Structural Units in PDB entry:
7LB8