Analysis of interatomic Contacts of Structural Units in PDB entry:
7LBE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7LBE entry

There are 7 chains in PDB entry 7LBE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 42	VAL 710
B	THR 38	GLN 273
C	ASN 81	TRP 462
E	ASP 24	LYS 130
F	GLN 24	VAL 144
G	ASP 24	ILE 134
H	GLU 24	SER 152

There are 56 helices in PDB entry 7LBE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	95	98	Right-handed 310
Helix 2	AA2	A	99	107	Right-handed alpha
Helix 3	AA3	A	114	122	Right-handed alpha
Helix 4	AA4	A	263	266	Right-handed 310
Helix 5	AA5	A	285	294	Right-handed 310
Helix 6	AA6	A	298	303	Right-handed alpha
Helix 7	AA7	A	308	316	Right-handed alpha
Helix 8	AA8	A	316	328	Right-handed alpha
Helix 9	AA9	A	334	352	Right-handed alpha
Helix 10	AB1	A	353	358	Right-handed alpha
Helix 11	AB2	A	363	385	Right-handed alpha
Helix 12	AB3	A	396	408	Right-handed alpha
Helix 13	AB4	A	415	429	Right-handed alpha
Helix 14	AB5	A	430	435	Right-handed 310
Helix 15	AB6	A	436	454	Right-handed alpha
Helix 16	AB7	A	460	475	Right-handed alpha
Helix 17	AB8	A	480	495	Right-handed alpha
Helix 18	AB9	A	496	507	Right-handed alpha
Helix 19	AC1	A	514	519	Right-handed 310
Helix 20	AC2	A	520	524	Right-handed 310
Helix 21	AC3	A	531	537	Right-handed alpha
Helix 22	AC4	A	547	558	Right-handed alpha
Helix 23	AC5	A	644	648	Right-handed 310
Helix 24	AC6	A	671	680	Right-handed alpha
Helix 25	AC7	A	681	684	Right-handed 310
Helix 26	AC8	B	46	56	Right-handed alpha
Helix 27	AC9	B	66	70	Right-handed 310
Helix 28	AD1	B	85	87	Right-handed 310
Helix 29	AD2	B	102	112	Right-handed alpha
Helix 30	AD3	B	117	128	Right-handed alpha
Helix 31	AD4	B	132	137	Right-handed alpha
Helix 32	AD5	B	163	167	Right-handed 310
Helix 33	AD6	B	172	176	Right-handed 310
Helix 34	AD7	B	215	217	Right-handed 310
Helix 35	AD8	B	218	236	Right-handed alpha
Helix 36	AD9	B	241	253	Right-handed alpha
Helix 37	AE1	B	254	258	Right-handed 310
Helix 38	AE2	C	112	116	Right-handed 310
Helix 39	AE3	C	146	159	Right-handed alpha
Helix 40	AE4	C	198	215	Right-handed alpha
Helix 41	AE5	C	222	230	Right-handed alpha
Helix 42	AE6	C	240	251	Right-handed alpha
Helix 43	AE7	C	321	335	Right-handed alpha
Helix 44	AE8	C	336	343	Right-handed 310
Helix 45	AE9	C	353	360	Right-handed alpha
Helix 46	AF1	C	361	364	Right-handed 310
Helix 47	AF2	C	377	381	Right-handed 310
Helix 48	AF3	C	413	436	Right-handed alpha
Helix 49	AF4	C	452	457	Right-handed alpha
Helix 50	AF5	E	102	106	Right-handed 310
Helix 51	AF6	F	51	55	Right-handed 310
Helix 52	AF7	F	85	88	Right-handed 310
Helix 53	AF8	F	110	114	Right-handed 310
Helix 54	AF9	G	107	111	Right-handed 310
Helix 55	AG1	H	85	88	Right-handed 310
Helix 56	AG2	H	110	114	Right-handed 310

There are 24 sheets in PDB entry 7LBE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	52	first strand
Strand 2	A	69	72	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	57	first strand
Strand 2	B	60	61	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	66	first strand
Strand 2	A	86	93	anti-parallel
Strand 3	A	75	83	anti-parallel
Strand 4	B	178	184	parallel
Strand 5	B	188	197	anti-parallel
Strand 6	B	202	211	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	137	first strand
Strand 2	A	268	271	parallel
Strand 3	A	276	280	anti-parallel
Strand 4	A	246	251	anti-parallel
Strand 5	A	233	240	anti-parallel
Strand 6	A	223	229	anti-parallel
Strand 7	A	212	217	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	184	first strand
Strand 2	A	360	362	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	197	first strand
Strand 2	A	207	210	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	527	528	first strand
Strand 2	A	578	581	anti-parallel
Strand 3	A	587	592	anti-parallel
Strand 4	A	613	619	anti-parallel
Strand 5	A	600	604	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	637	638	first strand
Strand 2	A	703	705	parallel
Strand 3	A	692	697	anti-parallel
Strand 4	A	652	658	anti-parallel
Strand 5	A	662	669	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	83	first strand
Strand 2	B	169	170	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	100	first strand
Strand 2	C	233	234	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	155	first strand
Strand 2	B	158	162	anti-parallel
Strand 3	C	447	448	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	95	first strand
Strand 2	C	104	110	anti-parallel
Strand 3	C	122	128	anti-parallel
Strand 4	C	133	136	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	171	172	first strand
Strand 2	C	319	320	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	189	first strand
Strand 2	C	192	197	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	27	30	first strand
Strand 2	E	42	48	anti-parallel
Strand 3	E	93	98	anti-parallel
Strand 4	E	85	90	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	33	36	first strand
Strand 2	E	125	129	parallel
Strand 3	E	108	113	anti-parallel
Strand 4	E	56	61	anti-parallel
Strand 5	E	68	72	anti-parallel
Strand 6	E	76	77	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	26	29	first strand
Strand 2	F	41	48	anti-parallel
Strand 3	F	101	106	anti-parallel
Strand 4	F	91	96	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	33	34	first strand
Strand 2	F	140	143	parallel
Strand 3	F	115	122	anti-parallel
Strand 4	F	57	62	anti-parallel
Strand 5	F	68	74	anti-parallel
Strand 6	F	81	83	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	33	34	first strand
Strand 2	F	140	143	parallel
Strand 3	F	115	122	anti-parallel
Strand 4	F	133	136	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	29	30	first strand
Strand 2	G	42	47	anti-parallel
Strand 3	G	98	103	anti-parallel
Strand 4	G	90	95	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	33	35	first strand
Strand 2	G	130	133	parallel
Strand 3	G	112	118	anti-parallel
Strand 4	G	61	66	anti-parallel
Strand 5	G	73	77	anti-parallel
Strand 6	G	81	82	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	26	30	first strand
Strand 2	H	40	48	anti-parallel
Strand 3	H	101	107	anti-parallel
Strand 4	H	91	96	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	34	35	first strand
Strand 2	H	147	151	parallel
Strand 3	H	115	122	anti-parallel
Strand 4	H	56	62	anti-parallel
Strand 5	H	68	74	anti-parallel
Strand 6	H	81	83	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	34	35	first strand
Strand 2	H	147	151	parallel
Strand 3	H	115	122	anti-parallel
Strand 4	H	142	143	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7LBE

Analysis of interatomic Contacts of Structural Units in PDB entry:
7LBE