Analysis of interatomic Contacts of Structural Units in PDB entry:
7LBF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7LBF entry

There are 8 chains in PDB entry 7LBF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 41	VAL 710
B	THR 38	GLN 273
C	ASN 81	TRP 462
D	LEU 27	HIS 310
E	ASP 24	ILE 129
F	GLN 24	VAL 144
G	ASP 24	ILE 134
H	GLU 24	SER 152

There are 59 helices in PDB entry 7LBF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	93	98	Right-handed 310
Helix 2	AA2	A	99	107	Right-handed alpha
Helix 3	AA3	A	114	122	Right-handed alpha
Helix 4	AA4	A	219	221	Right-handed 310
Helix 5	AA5	A	263	266	Right-handed 310
Helix 6	AA6	A	289	294	Right-handed 310
Helix 7	AA7	A	298	303	Right-handed alpha
Helix 8	AA8	A	308	316	Right-handed alpha
Helix 9	AA9	A	316	328	Right-handed alpha
Helix 10	AB1	A	334	352	Right-handed alpha
Helix 11	AB2	A	354	359	Right-handed alpha
Helix 12	AB3	A	363	385	Right-handed alpha
Helix 13	AB4	A	396	409	Right-handed alpha
Helix 14	AB5	A	415	429	Right-handed alpha
Helix 15	AB6	A	431	435	Right-handed 310
Helix 16	AB7	A	436	454	Right-handed alpha
Helix 17	AB8	A	460	475	Right-handed alpha
Helix 18	AB9	A	480	495	Right-handed alpha
Helix 19	AC1	A	496	507	Right-handed alpha
Helix 20	AC2	A	514	519	Right-handed 310
Helix 21	AC3	A	520	524	Right-handed 310
Helix 22	AC4	A	531	538	Right-handed alpha
Helix 23	AC5	A	547	559	Right-handed alpha
Helix 24	AC6	A	644	648	Right-handed 310
Helix 25	AC7	A	671	680	Right-handed alpha
Helix 26	AC8	A	681	684	Right-handed 310
Helix 27	AC9	A	707	710	Right-handed 310
Helix 28	AD1	B	46	55	Right-handed alpha
Helix 29	AD2	B	66	70	Right-handed 310
Helix 30	AD3	B	85	87	Right-handed 310
Helix 31	AD4	B	102	113	Right-handed alpha
Helix 32	AD5	B	117	128	Right-handed alpha
Helix 33	AD6	B	132	137	Right-handed alpha
Helix 34	AD7	B	163	167	Right-handed 310
Helix 35	AD8	B	172	176	Right-handed 310
Helix 36	AD9	B	215	217	Right-handed 310
Helix 37	AE1	B	218	236	Right-handed alpha
Helix 38	AE2	B	240	253	Right-handed alpha
Helix 39	AE3	B	254	258	Right-handed 310
Helix 40	AE4	C	112	114	Right-handed 310
Helix 41	AE5	C	146	159	Right-handed alpha
Helix 42	AE6	C	198	215	Right-handed alpha
Helix 43	AE7	C	222	230	Right-handed alpha
Helix 44	AE8	C	240	251	Right-handed alpha
Helix 45	AE9	C	321	335	Right-handed alpha
Helix 46	AF1	C	336	343	Right-handed 310
Helix 47	AF2	C	353	360	Right-handed alpha
Helix 48	AF3	C	361	364	Right-handed 310
Helix 49	AF4	C	377	379	Right-handed 310
Helix 50	AF5	C	413	436	Right-handed alpha
Helix 51	AF6	C	453	458	Right-handed alpha
Helix 52	AF7	D	91	95	Right-handed 310
Helix 53	AF8	D	104	106	Right-handed 310
Helix 54	AF9	D	251	255	Right-handed 310
Helix 55	AG1	E	102	106	Right-handed 310
Helix 56	AG2	F	51	55	Right-handed 310
Helix 57	AG3	F	110	114	Right-handed 310
Helix 58	AG4	G	107	111	Right-handed 310
Helix 59	AG5	H	110	114	Right-handed 310

There are 34 sheets in PDB entry 7LBF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	52	first strand
Strand 2	A	70	72	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	66	first strand
Strand 2	A	86	92	anti-parallel
Strand 3	A	76	83	anti-parallel
Strand 4	B	178	184	parallel
Strand 5	B	188	197	anti-parallel
Strand 6	B	202	211	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	137	first strand
Strand 2	A	268	271	parallel
Strand 3	A	276	280	anti-parallel
Strand 4	A	246	251	anti-parallel
Strand 5	A	233	240	anti-parallel
Strand 6	A	223	229	anti-parallel
Strand 7	A	212	217	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	184	first strand
Strand 2	A	360	362	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	197	first strand
Strand 2	A	207	210	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	527	528	first strand
Strand 2	A	578	581	anti-parallel
Strand 3	A	587	592	anti-parallel
Strand 4	A	614	619	anti-parallel
Strand 5	A	600	603	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	637	638	first strand
Strand 2	A	703	705	parallel
Strand 3	A	693	697	anti-parallel
Strand 4	A	652	657	anti-parallel
Strand 5	A	663	669	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	83	first strand
Strand 2	B	169	170	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	100	first strand
Strand 2	C	233	234	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	155	first strand
Strand 2	B	158	162	anti-parallel
Strand 3	C	447	448	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	85	first strand
Strand 2	C	133	136	anti-parallel
Strand 3	C	121	128	anti-parallel
Strand 4	C	104	110	anti-parallel
Strand 5	C	93	95	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	85	first strand
Strand 2	C	133	136	anti-parallel
Strand 3	C	121	128	anti-parallel
Strand 4	C	142	143	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	171	172	first strand
Strand 2	C	319	320	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	189	first strand
Strand 2	C	192	197	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	369	370	first strand
Strand 2	C	373	374	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	381	383	first strand
Strand 2	C	410	412	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	31	first strand
Strand 2	D	46	51	anti-parallel
Strand 3	D	81	86	anti-parallel
Strand 4	D	70	72	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	38	first strand
Strand 2	D	115	120	parallel
Strand 3	D	96	102	anti-parallel
Strand 4	D	55	58	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	136	141	first strand
Strand 2	D	203	208	parallel
Strand 3	D	185	192	anti-parallel
Strand 4	D	159	163	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	136	141	first strand
Strand 2	D	203	208	parallel
Strand 3	D	185	192	anti-parallel
Strand 4	D	197	199	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	145	148	first strand
Strand 2	D	177	181	anti-parallel
Strand 3	D	171	173	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	216	219	first strand
Strand 2	D	231	237	anti-parallel
Strand 3	D	270	277	anti-parallel
Strand 4	D	258	264	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	224	226	first strand
Strand 2	D	308	310	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	246	248	first strand
Strand 2	D	287	292	anti-parallel
Strand 3	D	301	306	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	27	30	first strand
Strand 2	E	42	48	anti-parallel
Strand 3	E	93	98	anti-parallel
Strand 4	E	85	90	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	33	35	first strand
Strand 2	E	125	128	parallel
Strand 3	E	108	113	anti-parallel
Strand 4	E	56	61	anti-parallel
Strand 5	E	68	72	anti-parallel
Strand 6	E	76	77	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	26	29	first strand
Strand 2	F	41	48	anti-parallel
Strand 3	F	101	106	anti-parallel
Strand 4	F	91	96	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	33	34	first strand
Strand 2	F	140	143	parallel
Strand 3	F	115	122	anti-parallel
Strand 4	F	57	62	anti-parallel
Strand 5	F	68	74	anti-parallel
Strand 6	F	81	83	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	33	34	first strand
Strand 2	F	140	143	parallel
Strand 3	F	115	122	anti-parallel
Strand 4	F	133	136	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	27	30	first strand
Strand 2	G	42	48	anti-parallel
Strand 3	G	98	103	anti-parallel
Strand 4	G	90	95	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	33	35	first strand
Strand 2	G	131	133	parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	81	82	first strand
Strand 2	G	73	77	anti-parallel
Strand 3	G	61	66	anti-parallel
Strand 4	G	113	118	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	26	30	first strand
Strand 2	H	40	48	anti-parallel
Strand 3	H	101	107	anti-parallel
Strand 4	H	91	96	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	34	35	first strand
Strand 2	H	147	151	parallel
Strand 3	H	115	122	anti-parallel
Strand 4	H	56	62	anti-parallel
Strand 5	H	68	74	anti-parallel
Strand 6	H	81	83	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7LBF

Analysis of interatomic Contacts of Structural Units in PDB entry:
7LBF