Analysis of interatomic Contacts of Structural Units in PDB entry:
7LBY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7LBY entry

There are 2 chains in PDB entry 7LBY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 18	GLU 871
B	ASN 67	ARG 772

There are 38 helices in PDB entry 7LBY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	42	Right-handed alpha
Helix 2	AA2	A	124	142	Right-handed alpha
Helix 3	AA3	A	148	153	Right-handed alpha
Helix 4	AA4	A	153	169	Right-handed alpha
Helix 5	AA5	A	178	191	Right-handed alpha
Helix 6	AA6	A	196	219	Right-handed alpha
Helix 7	AA7	A	222	227	Right-handed alpha
Helix 8	AA8	A	228	256	Right-handed alpha
Helix 9	AA9	A	287	300	Right-handed alpha
Helix 10	AB1	A	322	328	Right-handed alpha
Helix 11	AB2	A	343	352	Right-handed alpha
Helix 12	AB3	A	353	355	Right-handed 310
Helix 13	AB4	A	373	377	Right-handed 310
Helix 14	AB5	A	400	407	Right-handed alpha
Helix 15	AB6	A	416	421	Right-handed alpha
Helix 16	AB7	A	422	430	Right-handed alpha
Helix 17	AB8	A	457	468	Right-handed alpha
Helix 18	AB9	A	490	513	Right-handed alpha
Helix 19	AC1	A	519	551	Right-handed alpha
Helix 20	AC2	A	559	582	Right-handed alpha
Helix 21	AC3	A	589	610	Right-handed alpha
Helix 22	AC4	A	635	659	Right-handed alpha
Helix 23	AC5	A	663	688	Right-handed alpha
Helix 24	AC6	A	791	802	Right-handed alpha
Helix 25	AC7	A	805	831	Right-handed alpha
Helix 26	AC8	A	838	860	Right-handed alpha
Helix 27	AC9	A	861	863	Right-handed 310
Helix 28	AD1	B	145	149	Right-handed 310
Helix 29	AD2	B	243	259	Right-handed alpha
Helix 30	AD3	B	260	262	Right-handed 310
Helix 31	AD4	B	321	335	Right-handed alpha
Helix 32	AD5	B	532	538	Right-handed alpha
Helix 33	AD6	B	560	578	Right-handed alpha
Helix 34	AD7	B	612	614	Right-handed 310
Helix 35	AD8	B	615	630	Right-handed alpha
Helix 36	AD9	B	684	697	Right-handed alpha
Helix 37	AE1	B	731	743	Right-handed alpha
Helix 38	AE2	B	743	772	Right-handed alpha

There are 13 sheets in PDB entry 7LBY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	282	first strand
Strand 2	A	308	313	parallel
Strand 3	A	333	334	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	390	392	first strand
Strand 2	A	476	478	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	700	704	first strand
Strand 2	A	719	723	anti-parallel
Strand 3	A	728	732	anti-parallel
Strand 4	A	769	771	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	716	717	first strand
Strand 2	A	706	708	anti-parallel
Strand 3	A	746	748	anti-parallel
Strand 4	A	754	755	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	89	first strand
Strand 2	B	192	193	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	101	first strand
Strand 2	B	167	175	anti-parallel
Strand 3	B	129	133	anti-parallel
Strand 4	B	138	141	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	159	first strand
Strand 2	B	110	117	anti-parallel
Strand 3	B	200	203	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	267	269	first strand
Strand 2	B	233	235	parallel
Strand 3	B	278	280	parallel
Strand 4	B	316	317	parallel
Strand 5	B	300	302	anti-parallel
Strand 6	B	344	345	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	383	384	first strand
Strand 2	B	510	511	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	395	396	first strand
Strand 2	B	480	481	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	437	442	first strand
Strand 2	B	428	432	anti-parallel
Strand 3	B	484	487	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	527	528	first strand
Strand 2	B	726	727	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	586	588	first strand
Strand 2	B	552	554	parallel
Strand 3	B	601	604	parallel
Strand 4	B	676	682	parallel
Strand 5	B	662	668	anti-parallel
Strand 6	B	708	711	anti-parallel
Strand 7	B	716	719	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7LBY

Analysis of interatomic Contacts of Structural Units in PDB entry:
7LBY