Analysis of interatomic Contacts of Structural Units in PDB entry:
7LC0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7LC0 entry

There are 8 chains in PDB entry 7LC0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MSE 1	ALA 212
A	ALA 214	ASP 369
B	MSE 1	ALA 212
B	ALA 214	ASP 369
C	MSE 1	ALA 212
C	ALA 214	ASP 369
D	MSE 1	ALA 212
D	ALA 214	LYS 227

There are160 helices in PDB entry 7LC0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	9	Right-handed alpha
Helix 2	AA2	A	21	25	Right-handed 310
Helix 3	AA3	A	30	42	Right-handed alpha
Helix 4	AA4	A	46	63	Right-handed alpha
Helix 5	AA5	A	72	87	Right-handed alpha
Helix 6	AA6	A	89	96	Right-handed alpha
Helix 7	AA7	A	111	113	Right-handed 310
Helix 8	AA8	A	119	127	Right-handed alpha
Helix 9	AA9	A	141	148	Right-handed alpha
Helix 10	AB1	A	171	182	Right-handed alpha
Helix 11	AB2	A	197	202	Right-handed alpha
Helix 12	AB3	A	211	216	Right-handed alpha
Helix 13	AB4	A	226	235	Right-handed alpha
Helix 14	AB5	A	236	243	Right-handed 310
Helix 15	AB6	A	247	263	Right-handed alpha
Helix 16	AB7	A	269	282	Right-handed alpha
Helix 17	AB8	A	314	325	Right-handed alpha
Helix 18	AB9	A	333	338	Right-handed 310
Helix 19	AC1	A	344	348	Right-handed 310
Helix 20	AC2	A	351	366	Right-handed alpha
Helix 21	AC3	B	4	9	Right-handed alpha
Helix 22	AC4	B	21	25	Right-handed 310
Helix 23	AC5	B	30	42	Right-handed alpha
Helix 24	AC6	B	46	63	Right-handed alpha
Helix 25	AC7	B	72	87	Right-handed alpha
Helix 26	AC8	B	89	96	Right-handed alpha
Helix 27	AC9	B	111	113	Right-handed 310
Helix 28	AD1	B	119	127	Right-handed alpha
Helix 29	AD2	B	141	149	Right-handed alpha
Helix 30	AD3	B	171	182	Right-handed alpha
Helix 31	AD4	B	197	202	Right-handed alpha
Helix 32	AD5	B	211	216	Right-handed alpha
Helix 33	AD6	B	226	235	Right-handed alpha
Helix 34	AD7	B	236	245	Right-handed 310
Helix 35	AD8	B	247	263	Right-handed alpha
Helix 36	AD9	B	269	282	Right-handed alpha
Helix 37	AE1	B	307	312	Right-handed alpha
Helix 38	AE2	B	314	325	Right-handed alpha
Helix 39	AE3	B	335	338	Right-handed 310
Helix 40	AE4	B	344	348	Right-handed 310
Helix 41	AE5	B	351	369	Right-handed alpha
Helix 42	AE6	C	4	9	Right-handed alpha
Helix 43	AE7	C	21	25	Right-handed 310
Helix 44	AE8	C	30	42	Right-handed alpha
Helix 45	AE9	C	46	63	Right-handed alpha
Helix 46	AF1	C	72	87	Right-handed alpha
Helix 47	AF2	C	89	96	Right-handed alpha
Helix 48	AF3	C	111	113	Right-handed 310
Helix 49	AF4	C	119	127	Right-handed alpha
Helix 50	AF5	C	141	148	Right-handed alpha
Helix 51	AF6	C	171	182	Right-handed alpha
Helix 52	AF7	C	211	216	Right-handed alpha
Helix 53	AF8	C	226	235	Right-handed alpha
Helix 54	AF9	C	236	243	Right-handed 310
Helix 55	AG1	C	247	263	Right-handed alpha
Helix 56	AG2	C	269	282	Right-handed alpha
Helix 57	AG3	C	307	312	Right-handed alpha
Helix 58	AG4	C	314	324	Right-handed alpha
Helix 59	AG5	C	333	338	Right-handed 310
Helix 60	AG6	C	344	348	Right-handed 310
Helix 61	AG7	C	351	366	Right-handed alpha
Helix 62	AG8	D	4	9	Right-handed alpha
Helix 63	AG9	D	21	25	Right-handed 310
Helix 64	AH1	D	30	42	Right-handed alpha
Helix 65	AH2	D	46	63	Right-handed alpha
Helix 66	AH3	D	72	87	Right-handed alpha
Helix 67	AH4	D	89	96	Right-handed alpha
Helix 68	AH5	D	111	113	Right-handed 310
Helix 69	AH6	D	119	127	Right-handed alpha
Helix 70	AH7	D	141	148	Right-handed alpha
Helix 71	AH8	D	171	182	Right-handed alpha
Helix 72	AH9	D	211	216	Right-handed alpha
Helix 73	AI1	D	226	235	Right-handed alpha
Helix 74	AI2	D	236	243	Right-handed 310
Helix 75	AI3	D	247	264	Right-handed alpha
Helix 76	AI4	D	269	282	Right-handed alpha
Helix 77	AI5	D	307	312	Right-handed alpha
Helix 78	AI6	D	314	325	Right-handed alpha
Helix 79	AI7	D	335	338	Right-handed 310
Helix 80	AI8	D	344	348	Right-handed 310
Helix 81	AI9	D	351	369	Right-handed alpha
Helix 82	AJ1	E	4	9	Right-handed alpha
Helix 83	AJ2	E	21	25	Right-handed 310
Helix 84	AJ3	E	30	42	Right-handed alpha
Helix 85	AJ4	E	46	62	Right-handed alpha
Helix 86	AJ5	E	72	87	Right-handed alpha
Helix 87	AJ6	E	89	96	Right-handed alpha
Helix 88	AJ7	E	111	113	Right-handed 310
Helix 89	AJ8	E	119	127	Right-handed alpha
Helix 90	AJ9	E	141	149	Right-handed alpha
Helix 91	AK1	E	171	182	Right-handed alpha
Helix 92	AK2	E	211	216	Right-handed alpha
Helix 93	AK3	E	226	235	Right-handed alpha
Helix 94	AK4	E	236	243	Right-handed 310
Helix 95	AK5	E	247	263	Right-handed alpha
Helix 96	AK6	E	269	282	Right-handed alpha
Helix 97	AK7	E	314	325	Right-handed alpha
Helix 98	AK8	E	344	348	Right-handed 310
Helix 99	AK9	E	351	367	Right-handed alpha
Helix 100	AL1	F	4	9	Right-handed alpha
Helix 101	AL2	F	21	25	Right-handed 310
Helix 102	AL3	F	30	42	Right-handed alpha
Helix 103	AL4	F	46	63	Right-handed alpha
Helix 104	AL5	F	72	87	Right-handed alpha
Helix 105	AL6	F	89	96	Right-handed alpha
Helix 106	AL7	F	111	113	Right-handed 310
Helix 107	AL8	F	119	127	Right-handed alpha
Helix 108	AL9	F	141	148	Right-handed alpha
Helix 109	AM1	F	171	182	Right-handed alpha
Helix 110	AM2	F	197	202	Right-handed alpha
Helix 111	AM3	F	211	216	Right-handed alpha
Helix 112	AM4	F	226	235	Right-handed alpha
Helix 113	AM5	F	236	243	Right-handed 310
Helix 114	AM6	F	247	263	Right-handed alpha
Helix 115	AM7	F	273	283	Right-handed alpha
Helix 116	AM8	F	314	325	Right-handed alpha
Helix 117	AM9	F	333	338	Right-handed 310
Helix 118	AN1	F	344	348	Right-handed 310
Helix 119	AN2	F	351	366	Right-handed alpha
Helix 120	AN3	G	21	25	Right-handed 310
Helix 121	AN4	G	30	42	Right-handed alpha
Helix 122	AN5	G	46	63	Right-handed alpha
Helix 123	AN6	G	72	87	Right-handed alpha
Helix 124	AN7	G	89	94	Right-handed alpha
Helix 125	AN8	G	111	113	Right-handed 310
Helix 126	AN9	G	119	127	Right-handed alpha
Helix 127	AO1	G	141	148	Right-handed alpha
Helix 128	AO2	G	171	182	Right-handed alpha
Helix 129	AO3	G	197	202	Right-handed alpha
Helix 130	AO4	G	211	216	Right-handed alpha
Helix 131	AO5	G	226	235	Right-handed alpha
Helix 132	AO6	G	236	243	Right-handed 310
Helix 133	AO7	G	247	264	Right-handed alpha
Helix 134	AO8	G	269	272	Right-handed 310
Helix 135	AO9	G	273	282	Right-handed alpha
Helix 136	AP1	G	314	325	Right-handed alpha
Helix 137	AP2	G	335	338	Right-handed 310
Helix 138	AP3	G	344	348	Right-handed 310
Helix 139	AP4	G	351	366	Right-handed alpha
Helix 140	AP5	H	4	9	Right-handed alpha
Helix 141	AP6	H	21	25	Right-handed 310
Helix 142	AP7	H	30	42	Right-handed alpha
Helix 143	AP8	H	46	63	Right-handed alpha
Helix 144	AP9	H	72	87	Right-handed alpha
Helix 145	AQ1	H	89	96	Right-handed alpha
Helix 146	AQ2	H	111	113	Right-handed 310
Helix 147	AQ3	H	119	127	Right-handed alpha
Helix 148	AQ4	H	141	148	Right-handed alpha
Helix 149	AQ5	H	171	183	Right-handed alpha
Helix 150	AQ6	H	211	216	Right-handed alpha
Helix 151	AQ7	H	226	235	Right-handed alpha
Helix 152	AQ8	H	236	244	Right-handed 310
Helix 153	AQ9	H	247	263	Right-handed alpha
Helix 154	AR1	H	269	272	Right-handed 310
Helix 155	AR2	H	273	283	Right-handed alpha
Helix 156	AR3	H	307	312	Right-handed alpha
Helix 157	AR4	H	314	325	Right-handed alpha
Helix 158	AR5	H	335	338	Right-handed 310
Helix 159	AR6	H	344	348	Right-handed 310
Helix 160	AR7	H	351	366	Right-handed alpha

There are 23 sheets in PDB entry 7LC0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	16	first strand
Strand 2	A	327	330	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	70	first strand
Strand 2	A	221	225	anti-parallel
Strand 3	A	206	210	anti-parallel
Strand 4	A	186	189	parallel
Strand 5	A	153	159	parallel
Strand 6	A	105	109	parallel
Strand 7	A	130	134	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	286	291	first strand
Strand 2	A	301	306	anti-parallel
Strand 3	A	340	343	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	17	first strand
Strand 2	B	327	331	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	70	first strand
Strand 2	B	221	225	anti-parallel
Strand 3	B	206	210	anti-parallel
Strand 4	B	186	189	parallel
Strand 5	B	153	159	parallel
Strand 6	B	105	109	parallel
Strand 7	B	130	134	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	286	292	first strand
Strand 2	B	300	306	anti-parallel
Strand 3	B	340	343	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	17	first strand
Strand 2	C	327	331	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	70	first strand
Strand 2	C	221	225	anti-parallel
Strand 3	C	206	210	anti-parallel
Strand 4	C	186	189	parallel
Strand 5	C	153	159	parallel
Strand 6	C	105	109	parallel
Strand 7	C	130	134	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	286	292	first strand
Strand 2	C	300	306	anti-parallel
Strand 3	C	340	343	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	17	first strand
Strand 2	D	327	331	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	70	first strand
Strand 2	D	221	225	anti-parallel
Strand 3	D	206	210	anti-parallel
Strand 4	D	186	189	parallel
Strand 5	D	153	159	parallel
Strand 6	D	105	109	parallel
Strand 7	D	130	134	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	286	292	first strand
Strand 2	D	300	306	anti-parallel
Strand 3	D	340	343	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	17	first strand
Strand 2	E	327	335	parallel
Strand 3	E	340	343	anti-parallel
Strand 4	E	300	306	anti-parallel
Strand 5	E	286	292	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	66	70	first strand
Strand 2	E	221	225	anti-parallel
Strand 3	E	206	210	anti-parallel
Strand 4	E	186	189	parallel
Strand 5	E	153	159	parallel
Strand 6	E	105	109	parallel
Strand 7	E	130	134	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	13	16	first strand
Strand 2	F	327	330	parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	66	70	first strand
Strand 2	F	221	225	anti-parallel
Strand 3	F	206	210	anti-parallel
Strand 4	F	186	189	parallel
Strand 5	F	153	159	parallel
Strand 6	F	105	109	parallel
Strand 7	F	130	134	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	286	289	first strand
Strand 2	F	302	306	anti-parallel
Strand 3	F	340	343	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	13	17	first strand
Strand 2	G	327	331	parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	66	70	first strand
Strand 2	G	221	225	anti-parallel
Strand 3	G	206	210	anti-parallel
Strand 4	G	186	189	parallel
Strand 5	G	153	159	parallel
Strand 6	G	105	109	parallel
Strand 7	G	130	134	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	286	292	first strand
Strand 2	G	300	306	anti-parallel
Strand 3	G	340	343	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	13	17	first strand
Strand 2	H	327	331	parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	66	70	first strand
Strand 2	H	221	225	anti-parallel
Strand 3	H	206	210	anti-parallel
Strand 4	H	186	189	parallel
Strand 5	H	153	159	parallel
Strand 6	H	105	109	parallel
Strand 7	H	130	134	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	286	292	first strand
Strand 2	H	300	306	anti-parallel
Strand 3	H	340	343	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7LC0

Analysis of interatomic Contacts of Structural Units in PDB entry:
7LC0