Analysis of interatomic Contacts of Structural Units in PDB entry:
7LC3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7LC3 entry

There are 4 chains in PDB entry 7LC3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 557
B
 GLU 10VAL 682
C
 GLY 3GLU 190
D
 MET 1GLU 27
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 7LC3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 32Right-handed alpha
Helix 2
AA2
A
39 51Right-handed alpha
Helix 3
AA3
A
58 83Right-handed alpha
Helix 4
AA4
A
98 111Right-handed alpha
Helix 5
AA5
A
125 132Right-handed alpha
Helix 6
AA6
A
132 157Right-handed alpha
Helix 7
AA7
A
165 177Right-handed alpha
Helix 8
AA8
A
178 193Right-handed alpha
Helix 9
AA9
A
218 229Right-handed alpha
Helix 10
AB1
A
248 274Right-handed alpha
Helix 11
AB2
A
276 305Right-handed alpha
Helix 12
AB3
A
306 312Right-handed alpha
Helix 13
AB4
A
328 342Right-handed alpha
Helix 14
AB5
A
350 354Right-handed 310
Helix 15
AB6
A
355 368Right-handed alpha
Helix 16
AB7
A
377 399Right-handed alpha
Helix 17
AB8
A
410 436Right-handed alpha
Helix 18
AB9
A
438 443Right-handed alpha
Helix 19
AC1
A
449 465Right-handed alpha
Helix 20
AC2
A
478 509Right-handed alpha
Helix 21
AC3
A
524 550Right-handed alpha
Helix 22
AC4
A
550 557Right-handed alpha
Helix 23
AC5
B
11 24Right-handed alpha
Helix 24
AC6
B
26 31Right-handed alpha
Helix 25
AC7
B
33 56Right-handed alpha
Helix 26
AC8
B
61 102Right-handed alpha
Helix 27
AC9
B
122 126Right-handed 310
Helix 28
AD1
B
155 160Right-handed alpha
Helix 29
AD2
B
198 208Right-handed alpha
Helix 30
AD3
B
215 247Right-handed alpha
Helix 31
AD4
B
251 263Right-handed alpha
Helix 32
AD5
B
264 285Right-handed alpha
Helix 33
AD6
B
291 298Right-handed alpha
Helix 34
AD7
B
329 343Right-handed alpha
Helix 35
AD8
B
346 360Right-handed alpha
Helix 36
AD9
B
366 371Right-handed alpha
Helix 37
AE1
B
397 408Right-handed alpha
Helix 38
AE2
B
413 427Right-handed alpha
Helix 39
AE3
B
452 461Right-handed alpha
Helix 40
AE4
B
462 464Right-handed 310
Helix 41
AE5
B
474 486Right-handed alpha
Helix 42
AE6
B
495 509Right-handed alpha
Helix 43
AE7
B
522 529Right-handed alpha
Helix 44
AE8
B
539 546Right-handed alpha
Helix 45
AE9
B
556 595Right-handed alpha
Helix 46
AF1
B
599 606Right-handed 310
Helix 47
AF2
B
612 638Right-handed alpha
Helix 48
AF3
B
645 680Right-handed alpha
Helix 49
AF4
C
4 34Right-handed alpha
Helix 50
AF5
C
34 39Right-handed alpha
Helix 51
AF6
C
91 109Right-handed alpha
Helix 52
AF7
C
117 122Right-handed alpha
Helix 53
AF8
C
133 140Right-handed alpha
Helix 54
AF9
C
140 149Right-handed alpha
Helix 55
AG1
C
151 162Right-handed alpha
Helix 56
AG2
C
178 190Right-handed alpha
Helix 57
AG3
D
2 25Right-handed alpha
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There are 9 sheets in PDB entry 7LC3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 205first strand
Strand 2
A
211 214anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
403 404first strand
Strand 2
A
407 408anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 109first strand
Strand 2
B
118 121anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 134first strand
Strand 2
B
187 190anti-parallel
Strand 3
B
144 148anti-parallel
Strand 4
B
175 176anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 168first strand
Strand 2
B
150 154anti-parallel
Strand 3
B
181 182anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
287 289first strand
Strand 2
B
548 550anti-parallel
Strand 3
B
531 535parallel
Strand 4
B
512 517parallel
Strand 5
B
301 307parallel
Strand 6
B
466 470parallel
Strand 7
B
489 490parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
318 324first strand
Strand 2
B
438 446anti-parallel
Strand 3
B
429 435anti-parallel
Strand 4
B
391 396anti-parallel
Strand 5
B
383 388anti-parallel
Strand 6
B
374 378anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
42 45first strand
Strand 2
C
48 52anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
131 132first strand
Strand 2
C
175 177anti-parallel
Strand 3
C
163 164anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il