Analysis of interatomic Contacts of Structural Units in PDB entry:
7LFQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7LFQ entry

There are 3 chains in PDB entry 7LFQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASN 97
A
 GLY 99GLY 481
B
 A 1 C 6
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 7LFQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 39Right-handed alpha
Helix 2
AA2
A
42 51Right-handed alpha
Helix 3
AA3
A
88 92Right-handed 310
Helix 4
AA4
A
109 113Right-handed alpha
Helix 5
AA5
A
115 127Right-handed alpha
Helix 6
AA6
A
140 143Right-handed 310
Helix 7
AA7
A
144 158Right-handed alpha
Helix 8
AA8
A
162 174Right-handed 310
Helix 9
AA9
A
179 183Right-handed 310
Helix 10
AB1
A
184 195Right-handed alpha
Helix 11
AB2
A
215 222Right-handed alpha
Helix 12
AB3
A
239 256Right-handed alpha
Helix 13
AB4
A
275 312Right-handed alpha
Helix 14
AB5
A
391 399Right-handed alpha
Helix 15
AB6
A
413 419Right-handed alpha
Helix 16
AB7
A
420 430Right-handed alpha
Helix 17
AB8
A
439 446Right-handed alpha
Helix 18
AB9
A
447 451Right-handed 310
Helix 19
AC1
A
453 465Right-handed alpha
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There are 5 sheets in PDB entry 7LFQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
12 15anti-parallel
Strand 3
A
26 29anti-parallel
Strand 4
A
60 67parallel
Strand 5
A
74 81anti-parallel
Strand 6
A
342 351anti-parallel
Strand 7
A
330 339anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 87first strand
Strand 2
A
271 272anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 328first strand
Strand 2
A
99 108anti-parallel
Strand 3
A
228 235anti-parallel
Strand 4
A
204 213anti-parallel
Strand 5
A
468 479anti-parallel
Strand 6
A
385 389anti-parallel
Strand 7
A
374 377anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 328first strand
Strand 2
A
99 108anti-parallel
Strand 3
A
228 235anti-parallel
Strand 4
A
204 213anti-parallel
Strand 5
A
468 479anti-parallel
Strand 6
A
434 436parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 355first strand
Strand 2
A
401 402anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il