Analysis of interatomic Contacts of Structural Units in PDB entry:
7LFR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7LFR entry

There are 4 chains in PDB entry 7LFR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 3	HIS 502
B	GLU 3	SER 501
C	VAL 1	THR 47
D	VAL 1	THR 47

There are 34 helices in PDB entry 7LFR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	32	Right-handed alpha
Helix 2	AA2	A	52	58	Right-handed 310
Helix 3	AA3	A	134	138	Right-handed 310
Helix 4	AA4	A	145	152	Right-handed 310
Helix 5	AA5	A	170	174	Right-handed 310
Helix 6	AA6	A	220	224	Right-handed 310
Helix 7	AA7	A	318	322	Right-handed 310
Helix 8	AA8	A	331	336	Right-handed 310
Helix 9	AA9	A	348	354	Right-handed alpha
Helix 10	AB1	A	364	374	Right-handed 310
Helix 11	AB2	A	393	397	Right-handed 310
Helix 12	AB3	A	407	410	Right-handed 310
Helix 13	AB4	A	446	451	Right-handed 310
Helix 14	AB5	A	452	457	Right-handed 310
Helix 15	AB6	A	471	478	Right-handed alpha
Helix 16	AB7	A	495	499	Right-handed 310
Helix 17	AB8	B	19	32	Right-handed alpha
Helix 18	AB9	B	52	58	Right-handed 310
Helix 19	AC1	B	88	91	Right-handed 310
Helix 20	AC2	B	134	138	Right-handed 310
Helix 21	AC3	B	139	144	Right-handed alpha
Helix 22	AC4	B	147	152	Right-handed 310
Helix 23	AC5	B	170	174	Right-handed 310
Helix 24	AC6	B	203	207	Right-handed 310
Helix 25	AC7	B	220	224	Right-handed 310
Helix 26	AC8	B	318	322	Right-handed 310
Helix 27	AC9	B	331	336	Right-handed 310
Helix 28	AD1	B	348	354	Right-handed alpha
Helix 29	AD2	B	364	372	Right-handed 310
Helix 30	AD3	B	407	410	Right-handed 310
Helix 31	AD4	B	452	457	Right-handed alpha
Helix 32	AD5	B	471	478	Right-handed alpha
Helix 33	AD6	B	495	499	Right-handed 310
Helix 34	AD7	D	7	14	Right-handed 310

There are 21 sheets in PDB entry 7LFR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	7	first strand
Strand 2	A	36	37	parallel
Strand 3	A	60	61	parallel
Strand 4	A	82	83	parallel
Strand 5	A	118	119	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	17	first strand
Strand 2	C	27	32	parallel
Strand 3	C	17	22	anti-parallel
Strand 4	C	3	4	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	44	first strand
Strand 2	A	65	68	parallel
Strand 3	A	93	98	parallel
Strand 4	A	123	127	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	237	first strand
Strand 2	A	230	232	anti-parallel
Strand 3	A	266	268	parallel
Strand 4	A	261	263	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	247	first strand
Strand 2	A	252	255	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	276	277	first strand
Strand 2	A	283	284	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	295	first strand
Strand 2	A	300	304	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	341	first strand
Strand 2	A	376	377	parallel
Strand 3	A	401	402	parallel
Strand 4	A	431	432	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	347	first strand
Strand 2	A	381	383	parallel
Strand 3	A	412	417	parallel
Strand 4	A	436	440	parallel
Strand 5	A	464	467	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	7	first strand
Strand 2	B	36	37	parallel
Strand 3	B	60	61	parallel
Strand 4	B	82	83	parallel
Strand 5	B	118	119	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	17	first strand
Strand 2	D	27	32	parallel
Strand 3	D	17	22	anti-parallel
Strand 4	D	3	5	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	44	first strand
Strand 2	B	65	68	parallel
Strand 3	B	93	98	parallel
Strand 4	B	123	127	parallel
Strand 5	B	153	154	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	230	231	first strand
Strand 2	B	236	237	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	244	247	first strand
Strand 2	B	252	255	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	261	263	first strand
Strand 2	B	266	268	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	277	first strand
Strand 2	B	283	284	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	291	296	first strand
Strand 2	B	299	304	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	312	314	first strand
Strand 2	B	340	342	parallel
Strand 3	B	376	377	parallel
Strand 4	B	401	402	parallel
Strand 5	B	431	432	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	345	347	first strand
Strand 2	B	381	383	parallel
Strand 3	B	412	417	parallel
Strand 4	B	436	440	parallel
Strand 5	B	464	467	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	37	first strand
Strand 2	C	43	44	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	37	first strand
Strand 2	D	43	44	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7LFR

Analysis of interatomic Contacts of Structural Units in PDB entry:
7LFR