Analysis of interatomic Contacts of Structural Units in PDB entry:
7LFU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7LFU entry

There are 2 chains in PDB entry 7LFU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	THR 4	THR 313
A	GLY 4	GLY 4

There are 11 helices in PDB entry 7LFU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	27	33	Right-handed alpha
Helix 2	AA2	D	48	52	Right-handed 310
Helix 3	AA3	D	62	74	Right-handed alpha
Helix 4	AA4	D	77	92	Right-handed alpha
Helix 5	AA5	D	111	122	Right-handed alpha
Helix 6	AA6	D	130	141	Right-handed alpha
Helix 7	AA7	D	145	156	Right-handed alpha
Helix 8	AA8	D	165	174	Right-handed alpha
Helix 9	AA9	D	175	177	Right-handed 310
Helix 10	AB1	D	203	205	Right-handed 310
Helix 11	AB2	D	213	220	Right-handed alpha

There are 5 sheets in PDB entry 7LFU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	22	first strand
Strand 2	D	6	11	anti-parallel
Strand 3	D	55	58	parallel
Strand 4	D	35	37	anti-parallel
Strand 5	D	40	41	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	99	first strand
Strand 2	D	102	103	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	196	201	first strand
Strand 2	D	183	189	anti-parallel
Strand 3	D	232	239	anti-parallel
Strand 4	D	221	222	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	196	201	first strand
Strand 2	D	183	189	anti-parallel
Strand 3	D	232	239	anti-parallel
Strand 4	D	310	312	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	207	209	first strand
Strand 2	D	242	254	parallel
Strand 3	D	297	307	anti-parallel
Strand 4	D	261	267	anti-parallel
Strand 5	D	272	279	anti-parallel
Strand 6	D	283	287	anti-parallel
Strand 7	D	290	294	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7LFU

Analysis of interatomic Contacts of Structural Units in PDB entry:
7LFU