Analysis of interatomic Contacts of Structural Units in PDB entry:
7LGF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7LGF entry

There are 21 chains in PDB entry 7LGF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	TYR 132
B	ALA 1	TYR 132
C	ALA 1	TYR 132
D	ALA 1	TYR 132
E	ALA 1	TYR 132
F	ALA 1	TYR 132
G	ALA 1	TYR 132
H	ALA 1	TYR 132
I	ALA 1	TYR 132
J	ALA 1	TYR 132
K	ALA 1	TYR 132
L	ALA 1	TYR 132
M	ALA 1	TYR 132
N	ALA 1	TYR 132
O	ALA 1	TYR 132
P	ALA 1	TYR 132
Q	ALA 1	TYR 132
R	ALA 1	TYR 132
S	ALA 1	TYR 132
T	ALA 1	TYR 132
U	ALA 1	TYR 132

There are 58 helices in PDB entry 7LGF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	41	45	Right-handed 310
Helix 2	AA2	A	101	118	Right-handed alpha
Helix 3	AA3	A	118	127	Right-handed alpha
Helix 4	AA4	B	101	117	Right-handed alpha
Helix 5	AA5	B	118	126	Right-handed alpha
Helix 6	AA6	C	41	45	Right-handed 310
Helix 7	AA7	C	101	118	Right-handed alpha
Helix 8	AA8	D	41	45	Right-handed 310
Helix 9	AA9	D	101	118	Right-handed alpha
Helix 10	AB1	D	118	127	Right-handed alpha
Helix 11	AB2	E	41	45	Right-handed 310
Helix 12	AB3	E	101	117	Right-handed alpha
Helix 13	AB4	E	118	127	Right-handed alpha
Helix 14	AB5	F	41	45	Right-handed 310
Helix 15	AB6	F	101	118	Right-handed alpha
Helix 16	AB7	F	118	127	Right-handed alpha
Helix 17	AB8	G	102	117	Right-handed alpha
Helix 18	AB9	G	118	126	Right-handed alpha
Helix 19	AC1	H	101	116	Right-handed alpha
Helix 20	AC2	H	118	127	Right-handed alpha
Helix 21	AC3	I	41	46	Right-handed alpha
Helix 22	AC4	I	101	117	Right-handed alpha
Helix 23	AC5	I	118	127	Right-handed alpha
Helix 24	AC6	J	40	45	Right-handed 310
Helix 25	AC7	J	101	118	Right-handed alpha
Helix 26	AC8	J	118	127	Right-handed alpha
Helix 27	AC9	K	41	46	Right-handed alpha
Helix 28	AD1	K	101	118	Right-handed alpha
Helix 29	AD2	K	118	127	Right-handed alpha
Helix 30	AD3	L	41	46	Right-handed alpha
Helix 31	AD4	L	101	117	Right-handed alpha
Helix 32	AD5	L	118	127	Right-handed alpha
Helix 33	AD6	M	41	45	Right-handed 310
Helix 34	AD7	M	101	117	Right-handed alpha
Helix 35	AD8	M	118	128	Right-handed alpha
Helix 36	AD9	N	41	45	Right-handed 310
Helix 37	AE1	N	75	79	Right-handed 310
Helix 38	AE2	N	101	118	Right-handed alpha
Helix 39	AE3	N	118	127	Right-handed alpha
Helix 40	AE4	O	40	45	Right-handed alpha
Helix 41	AE5	O	101	117	Right-handed alpha
Helix 42	AE6	O	118	127	Right-handed alpha
Helix 43	AE7	P	41	45	Right-handed 310
Helix 44	AE8	P	101	118	Right-handed alpha
Helix 45	AE9	P	118	127	Right-handed alpha
Helix 46	AF1	Q	101	118	Right-handed alpha
Helix 47	AF2	Q	119	127	Right-handed alpha
Helix 48	AF3	R	101	118	Right-handed alpha
Helix 49	AF4	R	118	127	Right-handed alpha
Helix 50	AF5	S	41	45	Right-handed 310
Helix 51	AF6	S	102	116	Right-handed alpha
Helix 52	AF7	S	118	127	Right-handed alpha
Helix 53	AF8	T	41	45	Right-handed 310
Helix 54	AF9	T	101	117	Right-handed alpha
Helix 55	AG1	T	118	126	Right-handed 310
Helix 56	AG2	U	41	46	Right-handed alpha
Helix 57	AG3	U	101	117	Right-handed alpha
Helix 58	AG4	U	118	128	Right-handed alpha

There are 20 sheets in PDB entry 7LGF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	11	first strand
Strand 2	A	17	24	anti-parallel
Strand 3	A	32	37	anti-parallel
Strand 4	A	48	53	anti-parallel
Strand 5	A	63	74	anti-parallel
Strand 6	A	83	94	anti-parallel
Strand 7	B	86	96	anti-parallel
Strand 8	B	62	72	anti-parallel
Strand 9	B	47	53	anti-parallel
Strand 10	B	32	33	anti-parallel
Strand 11	B	26	27	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	17	21	anti-parallel

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There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	23	first strand
Strand 2	C	33	36	anti-parallel
Strand 3	C	47	53	anti-parallel
Strand 4	C	62	74	anti-parallel
Strand 5	C	83	96	anti-parallel
Strand 6	M	84	96	anti-parallel
Strand 7	M	62	73	anti-parallel
Strand 8	M	47	50	anti-parallel
Strand 9	M	32	37	anti-parallel
Strand 10	M	17	27	anti-parallel
Strand 11	M	6	11	anti-parallel

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There are 12 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	11	first strand
Strand 2	D	17	26	anti-parallel
Strand 3	D	33	37	anti-parallel
Strand 4	D	47	51	anti-parallel
Strand 5	D	64	70	anti-parallel
Strand 6	D	88	94	anti-parallel
Strand 7	N	83	96	anti-parallel
Strand 8	N	62	74	anti-parallel
Strand 9	N	47	52	anti-parallel
Strand 10	N	32	36	anti-parallel
Strand 11	N	17	27	anti-parallel
Strand 12	N	6	11	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	73	74	first strand
Strand 2	D	83	84	anti-parallel

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There are 12 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	8	first strand
Strand 2	E	19	26	anti-parallel
Strand 3	E	33	36	anti-parallel
Strand 4	E	47	53	anti-parallel
Strand 5	E	62	74	anti-parallel
Strand 6	E	83	96	anti-parallel
Strand 7	O	83	96	anti-parallel
Strand 8	O	63	74	anti-parallel
Strand 9	O	48	53	anti-parallel
Strand 10	O	32	37	anti-parallel
Strand 11	O	17	26	anti-parallel
Strand 12	O	6	11	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	11	first strand
Strand 2	F	17	21	anti-parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	32	33	first strand
Strand 2	F	47	53	anti-parallel
Strand 3	F	62	73	anti-parallel
Strand 4	F	84	96	anti-parallel
Strand 5	P	83	96	anti-parallel
Strand 6	P	62	74	anti-parallel
Strand 7	P	47	53	anti-parallel
Strand 8	P	33	37	anti-parallel
Strand 9	P	17	26	anti-parallel
Strand 10	P	6	11	anti-parallel

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There are 12 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	6	11	first strand
Strand 2	G	17	26	anti-parallel
Strand 3	G	33	37	anti-parallel
Strand 4	G	47	53	anti-parallel
Strand 5	G	63	74	anti-parallel
Strand 6	G	83	95	anti-parallel
Strand 7	Q	83	96	anti-parallel
Strand 8	Q	62	74	anti-parallel
Strand 9	Q	47	53	anti-parallel
Strand 10	Q	32	37	anti-parallel
Strand 11	Q	19	27	anti-parallel
Strand 12	Q	6	8	anti-parallel

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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	11	first strand
Strand 2	H	17	27	anti-parallel
Strand 3	H	32	36	anti-parallel
Strand 4	H	47	53	anti-parallel
Strand 5	H	62	69	anti-parallel
Strand 6	H	88	96	anti-parallel
Strand 7	R	87	97	anti-parallel
Strand 8	R	61	71	anti-parallel
Strand 9	R	47	53	anti-parallel
Strand 10	R	33	36	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	72	74	first strand
Strand 2	H	83	86	anti-parallel

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There are 12 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	6	8	first strand
Strand 2	I	19	27	anti-parallel
Strand 3	I	32	37	anti-parallel
Strand 4	I	47	52	anti-parallel
Strand 5	I	61	69	anti-parallel
Strand 6	I	90	97	anti-parallel
Strand 7	S	83	94	anti-parallel
Strand 8	S	63	74	anti-parallel
Strand 9	S	47	53	anti-parallel
Strand 10	S	33	37	anti-parallel
Strand 11	S	17	23	anti-parallel
Strand 12	S	6	11	anti-parallel

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There are 10 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	6	11	first strand
Strand 2	J	17	24	anti-parallel
Strand 3	J	32	36	anti-parallel
Strand 4	J	47	54	anti-parallel
Strand 5	J	63	74	anti-parallel
Strand 6	J	83	95	anti-parallel
Strand 7	T	86	90	anti-parallel
Strand 8	T	62	72	anti-parallel
Strand 9	T	47	52	anti-parallel
Strand 10	T	35	36	anti-parallel

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There are 10 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	6	11	first strand
Strand 2	J	17	24	anti-parallel
Strand 3	J	32	36	anti-parallel
Strand 4	J	47	54	anti-parallel
Strand 5	J	63	74	anti-parallel
Strand 6	J	83	95	anti-parallel
Strand 7	T	93	96	anti-parallel
Strand 8	T	62	72	anti-parallel
Strand 9	T	47	52	anti-parallel
Strand 10	T	35	36	anti-parallel

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There are 11 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	6	11	first strand
Strand 2	K	17	27	anti-parallel
Strand 3	K	32	36	anti-parallel
Strand 4	K	47	53	anti-parallel
Strand 5	K	62	71	anti-parallel
Strand 6	K	87	96	anti-parallel
Strand 7	U	87	94	anti-parallel
Strand 8	U	64	71	anti-parallel
Strand 9	U	47	52	anti-parallel
Strand 10	U	33	36	anti-parallel
Strand 11	U	25	26	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	8	9	first strand
Strand 2	L	18	19	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	24	26	first strand
Strand 2	L	33	36	anti-parallel
Strand 3	L	47	53	anti-parallel
Strand 4	L	62	73	anti-parallel
Strand 5	L	84	96	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	6	11	first strand
Strand 2	R	17	21	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	6	11	first strand
Strand 2	T	17	21	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	6	11	first strand
Strand 2	U	17	21	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7LGF

Analysis of interatomic Contacts of Structural Units in PDB entry:
7LGF