Analysis of interatomic Contacts of Structural Units in PDB entry:
7LGM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7LGM entry

There are 2 chains in PDB entry 7LGM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 2	PHE 720
B	ASN 2	PHE 720

There are 56 helices in PDB entry 7LGM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	15	Right-handed 310
Helix 2	AA2	A	30	34	Right-handed 310
Helix 3	AA3	A	40	50	Right-handed alpha
Helix 4	AA4	A	65	69	Right-handed 310
Helix 5	AA5	A	75	84	Right-handed alpha
Helix 6	AA6	A	85	91	Right-handed alpha
Helix 7	AA7	A	121	136	Right-handed alpha
Helix 8	AA8	A	145	160	Right-handed alpha
Helix 9	AA9	A	163	175	Right-handed alpha
Helix 10	AB1	A	209	218	Right-handed alpha
Helix 11	AB2	A	218	228	Right-handed alpha
Helix 12	AB3	A	246	251	Right-handed alpha
Helix 13	AB4	A	275	287	Right-handed alpha
Helix 14	AB5	A	331	340	Right-handed alpha
Helix 15	AB6	A	359	369	Right-handed alpha
Helix 16	AB7	A	405	420	Right-handed alpha
Helix 17	AB8	A	436	440	Right-handed 310
Helix 18	AB9	A	452	456	Right-handed 310
Helix 19	AC1	A	466	473	Right-handed alpha
Helix 20	AC2	A	497	510	Right-handed alpha
Helix 21	AC3	A	535	544	Right-handed alpha
Helix 22	AC4	A	556	564	Right-handed alpha
Helix 23	AC5	A	593	603	Right-handed alpha
Helix 24	AC6	A	618	624	Right-handed 310
Helix 25	AC7	A	645	649	Right-handed 310
Helix 26	AC8	A	679	685	Right-handed 310
Helix 27	AC9	A	692	706	Right-handed alpha
Helix 28	AD1	A	710	719	Right-handed alpha
Helix 29	AD2	B	11	15	Right-handed 310
Helix 30	AD3	B	30	34	Right-handed 310
Helix 31	AD4	B	40	50	Right-handed alpha
Helix 32	AD5	B	65	69	Right-handed 310
Helix 33	AD6	B	75	84	Right-handed alpha
Helix 34	AD7	B	85	91	Right-handed alpha
Helix 35	AD8	B	121	136	Right-handed alpha
Helix 36	AD9	B	145	160	Right-handed alpha
Helix 37	AE1	B	163	175	Right-handed alpha
Helix 38	AE2	B	209	218	Right-handed alpha
Helix 39	AE3	B	218	228	Right-handed alpha
Helix 40	AE4	B	246	251	Right-handed alpha
Helix 41	AE5	B	275	287	Right-handed alpha
Helix 42	AE6	B	331	340	Right-handed alpha
Helix 43	AE7	B	359	369	Right-handed alpha
Helix 44	AE8	B	405	420	Right-handed alpha
Helix 45	AE9	B	436	440	Right-handed 310
Helix 46	AF1	B	452	456	Right-handed 310
Helix 47	AF2	B	466	473	Right-handed alpha
Helix 48	AF3	B	497	510	Right-handed alpha
Helix 49	AF4	B	535	544	Right-handed alpha
Helix 50	AF5	B	556	564	Right-handed alpha
Helix 51	AF6	B	593	603	Right-handed alpha
Helix 52	AF7	B	618	624	Right-handed 310
Helix 53	AF8	B	645	649	Right-handed 310
Helix 54	AF9	B	679	685	Right-handed 310
Helix 55	AG1	B	692	706	Right-handed alpha
Helix 56	AG2	B	710	719	Right-handed alpha

There are 14 sheets in PDB entry 7LGM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	9	first strand
Strand 2	A	18	24	anti-parallel
Strand 3	A	107	114	anti-parallel
Strand 4	A	95	99	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	182	first strand
Strand 2	A	189	191	anti-parallel
Strand 3	A	198	200	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	273	first strand
Strand 2	A	256	260	anti-parallel
Strand 3	A	293	297	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	313	318	first strand
Strand 2	A	302	308	anti-parallel
Strand 3	A	424	430	anti-parallel
Strand 4	A	444	446	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	323	325	first strand
Strand 2	A	382	384	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	526	527	first strand
Strand 2	A	522	523	anti-parallel
Strand 3	A	513	515	anti-parallel
Strand 4	A	550	553	parallel
Strand 5	A	486	490	parallel
Strand 6	A	570	575	parallel
Strand 7	A	605	611	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	632	634	first strand
Strand 2	A	651	658	parallel
Strand 3	A	661	668	anti-parallel
Strand 4	A	671	677	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	9	first strand
Strand 2	B	18	24	anti-parallel
Strand 3	B	107	114	anti-parallel
Strand 4	B	95	99	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	182	first strand
Strand 2	B	189	191	anti-parallel
Strand 3	B	198	200	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	273	first strand
Strand 2	B	256	260	anti-parallel
Strand 3	B	293	297	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	313	318	first strand
Strand 2	B	302	308	anti-parallel
Strand 3	B	424	430	anti-parallel
Strand 4	B	444	446	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	323	325	first strand
Strand 2	B	382	384	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	526	527	first strand
Strand 2	B	522	523	anti-parallel
Strand 3	B	513	515	anti-parallel
Strand 4	B	550	553	parallel
Strand 5	B	486	490	parallel
Strand 6	B	570	575	parallel
Strand 7	B	605	611	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	632	634	first strand
Strand 2	B	651	658	parallel
Strand 3	B	661	668	anti-parallel
Strand 4	B	671	677	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7LGM

Analysis of interatomic Contacts of Structural Units in PDB entry:
7LGM