Analysis of interatomic Contacts of Structural Units in PDB entry:
7LGQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7LGQ entry

There are 12 chains in PDB entry 7LGQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ILE 872
B	MET 1	ILE 872
C	MET 1	ILE 872
D	MET 1	ILE 872
E	ASN 9	ASN 9
F	ASN 9	ASN 9
G	ASN 9	ASN 9
H	ASN 9	ASN 9
I	ASN 9	ASN 9
J	ASN 9	ASN 9
K	ASN 9	ASN 9
L	ASN 9	ASN 9

There are136 helices in PDB entry 7LGQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	51	Right-handed alpha
Helix 2	AA2	A	79	91	Right-handed alpha
Helix 3	AA3	A	118	136	Right-handed alpha
Helix 4	AA4	A	144	161	Right-handed alpha
Helix 5	AA5	A	164	177	Right-handed alpha
Helix 6	AA6	A	194	198	Right-handed 310
Helix 7	AA7	A	210	217	Right-handed alpha
Helix 8	AA8	A	219	229	Right-handed alpha
Helix 9	AA9	A	245	254	Right-handed alpha
Helix 10	AB1	A	277	289	Right-handed alpha
Helix 11	AB2	A	335	344	Right-handed alpha
Helix 12	AB3	A	363	372	Right-handed alpha
Helix 13	AB4	A	394	398	Right-handed 310
Helix 14	AB5	A	405	408	Right-handed 310
Helix 15	AB6	A	409	423	Right-handed alpha
Helix 16	AB7	A	440	445	Right-handed alpha
Helix 17	AB8	A	457	462	Right-handed alpha
Helix 18	AB9	A	472	480	Right-handed alpha
Helix 19	AC1	A	498	511	Right-handed alpha
Helix 20	AC2	A	512	514	Right-handed 310
Helix 21	AC3	A	539	548	Right-handed alpha
Helix 22	AC4	A	560	568	Right-handed alpha
Helix 23	AC5	A	594	607	Right-handed alpha
Helix 24	AC6	A	621	626	Right-handed alpha
Helix 25	AC7	A	627	630	Right-handed 310
Helix 26	AC8	A	644	652	Right-handed alpha
Helix 27	AC9	A	680	682	Right-handed 310
Helix 28	AD1	A	690	707	Right-handed alpha
Helix 29	AD2	A	710	721	Right-handed alpha
Helix 30	AD3	A	750	762	Right-handed alpha
Helix 31	AD4	A	781	791	Right-handed alpha
Helix 32	AD5	A	810	824	Right-handed alpha
Helix 33	AD6	A	858	866	Right-handed alpha
Helix 34	AD7	A	867	870	Right-handed 310
Helix 35	AD8	B	44	51	Right-handed alpha
Helix 36	AD9	B	79	91	Right-handed alpha
Helix 37	AE1	B	118	136	Right-handed alpha
Helix 38	AE2	B	144	161	Right-handed alpha
Helix 39	AE3	B	164	177	Right-handed alpha
Helix 40	AE4	B	194	198	Right-handed 310
Helix 41	AE5	B	210	217	Right-handed alpha
Helix 42	AE6	B	219	229	Right-handed alpha
Helix 43	AE7	B	245	254	Right-handed alpha
Helix 44	AE8	B	277	289	Right-handed alpha
Helix 45	AE9	B	335	344	Right-handed alpha
Helix 46	AF1	B	363	372	Right-handed alpha
Helix 47	AF2	B	394	398	Right-handed 310
Helix 48	AF3	B	405	408	Right-handed 310
Helix 49	AF4	B	409	423	Right-handed alpha
Helix 50	AF5	B	440	445	Right-handed alpha
Helix 51	AF6	B	457	462	Right-handed alpha
Helix 52	AF7	B	472	480	Right-handed alpha
Helix 53	AF8	B	498	511	Right-handed alpha
Helix 54	AF9	B	512	514	Right-handed 310
Helix 55	AG1	B	539	548	Right-handed alpha
Helix 56	AG2	B	560	568	Right-handed alpha
Helix 57	AG3	B	594	607	Right-handed alpha
Helix 58	AG4	B	621	626	Right-handed alpha
Helix 59	AG5	B	627	630	Right-handed 310
Helix 60	AG6	B	644	652	Right-handed alpha
Helix 61	AG7	B	680	682	Right-handed 310
Helix 62	AG8	B	690	707	Right-handed alpha
Helix 63	AG9	B	710	721	Right-handed alpha
Helix 64	AH1	B	750	762	Right-handed alpha
Helix 65	AH2	B	781	791	Right-handed alpha
Helix 66	AH3	B	810	824	Right-handed alpha
Helix 67	AH4	B	858	866	Right-handed alpha
Helix 68	AH5	B	867	870	Right-handed 310
Helix 69	AH6	C	44	51	Right-handed alpha
Helix 70	AH7	C	79	91	Right-handed alpha
Helix 71	AH8	C	118	136	Right-handed alpha
Helix 72	AH9	C	144	161	Right-handed alpha
Helix 73	AI1	C	164	177	Right-handed alpha
Helix 74	AI2	C	194	198	Right-handed 310
Helix 75	AI3	C	210	217	Right-handed alpha
Helix 76	AI4	C	219	229	Right-handed alpha
Helix 77	AI5	C	245	254	Right-handed alpha
Helix 78	AI6	C	277	289	Right-handed alpha
Helix 79	AI7	C	335	344	Right-handed alpha
Helix 80	AI8	C	363	372	Right-handed alpha
Helix 81	AI9	C	394	398	Right-handed 310
Helix 82	AJ1	C	405	408	Right-handed 310
Helix 83	AJ2	C	409	423	Right-handed alpha
Helix 84	AJ3	C	440	445	Right-handed alpha
Helix 85	AJ4	C	457	462	Right-handed alpha
Helix 86	AJ5	C	472	480	Right-handed alpha
Helix 87	AJ6	C	498	511	Right-handed alpha
Helix 88	AJ7	C	512	514	Right-handed 310
Helix 89	AJ8	C	539	548	Right-handed alpha
Helix 90	AJ9	C	560	568	Right-handed alpha
Helix 91	AK1	C	594	607	Right-handed alpha
Helix 92	AK2	C	621	626	Right-handed alpha
Helix 93	AK3	C	627	630	Right-handed 310
Helix 94	AK4	C	644	652	Right-handed alpha
Helix 95	AK5	C	680	682	Right-handed 310
Helix 96	AK6	C	690	707	Right-handed alpha
Helix 97	AK7	C	710	721	Right-handed alpha
Helix 98	AK8	C	750	762	Right-handed alpha
Helix 99	AK9	C	781	791	Right-handed alpha
Helix 100	AL1	C	810	824	Right-handed alpha
Helix 101	AL2	C	858	866	Right-handed alpha
Helix 102	AL3	C	867	870	Right-handed 310
Helix 103	AL4	D	44	51	Right-handed alpha
Helix 104	AL5	D	79	91	Right-handed alpha
Helix 105	AL6	D	118	136	Right-handed alpha
Helix 106	AL7	D	144	161	Right-handed alpha
Helix 107	AL8	D	164	177	Right-handed alpha
Helix 108	AL9	D	194	198	Right-handed 310
Helix 109	AM1	D	210	217	Right-handed alpha
Helix 110	AM2	D	219	229	Right-handed alpha
Helix 111	AM3	D	245	254	Right-handed alpha
Helix 112	AM4	D	277	289	Right-handed alpha
Helix 113	AM5	D	335	344	Right-handed alpha
Helix 114	AM6	D	363	372	Right-handed alpha
Helix 115	AM7	D	394	398	Right-handed 310
Helix 116	AM8	D	405	408	Right-handed 310
Helix 117	AM9	D	409	423	Right-handed alpha
Helix 118	AN1	D	440	445	Right-handed alpha
Helix 119	AN2	D	457	462	Right-handed alpha
Helix 120	AN3	D	472	480	Right-handed alpha
Helix 121	AN4	D	498	511	Right-handed alpha
Helix 122	AN5	D	512	514	Right-handed 310
Helix 123	AN6	D	539	548	Right-handed alpha
Helix 124	AN7	D	560	568	Right-handed alpha
Helix 125	AN8	D	594	607	Right-handed alpha
Helix 126	AN9	D	621	626	Right-handed alpha
Helix 127	AO1	D	627	630	Right-handed 310
Helix 128	AO2	D	644	652	Right-handed alpha
Helix 129	AO3	D	680	682	Right-handed 310
Helix 130	AO4	D	690	707	Right-handed alpha
Helix 131	AO5	D	710	721	Right-handed alpha
Helix 132	AO6	D	750	762	Right-handed alpha
Helix 133	AO7	D	781	791	Right-handed alpha
Helix 134	AO8	D	810	824	Right-handed alpha
Helix 135	AO9	D	858	866	Right-handed alpha
Helix 136	AP1	D	867	870	Right-handed 310

There are 28 sheets in PDB entry 7LGQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	10	first strand
Strand 2	A	21	28	anti-parallel
Strand 3	A	109	115	anti-parallel
Strand 4	A	99	104	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	183	first strand
Strand 2	A	190	192	anti-parallel
Strand 3	A	199	202	anti-parallel
Strand 4	A	205	206	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	275	first strand
Strand 2	A	258	260	anti-parallel
Strand 3	A	300	301	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	400	403	first strand
Strand 2	A	317	324	anti-parallel
Strand 3	A	306	312	anti-parallel
Strand 4	A	428	434	anti-parallel
Strand 5	A	447	453	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	327	329	first strand
Strand 2	A	386	388	anti-parallel

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There are 11 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	530	534	first strand
Strand 2	A	524	527	anti-parallel
Strand 3	A	517	520	anti-parallel
Strand 4	A	554	558	parallel
Strand 5	A	490	494	parallel
Strand 6	A	574	579	parallel
Strand 7	A	609	618	parallel
Strand 8	A	634	639	parallel
Strand 9	A	656	661	parallel
Strand 10	A	664	669	anti-parallel
Strand 11	A	672	678	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	733	736	first strand
Strand 2	A	741	744	anti-parallel
Strand 3	A	851	854	parallel
Strand 4	A	768	770	parallel
Strand 5	A	795	796	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	10	first strand
Strand 2	B	21	28	anti-parallel
Strand 3	B	109	115	anti-parallel
Strand 4	B	99	104	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	183	first strand
Strand 2	B	190	192	anti-parallel
Strand 3	B	199	202	anti-parallel
Strand 4	B	205	206	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	272	275	first strand
Strand 2	B	258	260	anti-parallel
Strand 3	B	300	301	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	400	403	first strand
Strand 2	B	317	324	anti-parallel
Strand 3	B	306	312	anti-parallel
Strand 4	B	428	434	anti-parallel
Strand 5	B	447	453	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	327	329	first strand
Strand 2	B	386	388	anti-parallel

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There are 11 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	530	534	first strand
Strand 2	B	524	527	anti-parallel
Strand 3	B	517	520	anti-parallel
Strand 4	B	554	558	parallel
Strand 5	B	490	494	parallel
Strand 6	B	574	579	parallel
Strand 7	B	609	618	parallel
Strand 8	B	634	639	parallel
Strand 9	B	656	661	parallel
Strand 10	B	664	669	anti-parallel
Strand 11	B	672	678	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	733	736	first strand
Strand 2	B	741	744	anti-parallel
Strand 3	B	851	854	parallel
Strand 4	B	768	770	parallel
Strand 5	B	795	796	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	10	first strand
Strand 2	C	21	28	anti-parallel
Strand 3	C	109	115	anti-parallel
Strand 4	C	99	104	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	183	first strand
Strand 2	C	190	192	anti-parallel
Strand 3	C	199	202	anti-parallel
Strand 4	C	205	206	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	272	275	first strand
Strand 2	C	258	260	anti-parallel
Strand 3	C	300	301	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	400	403	first strand
Strand 2	C	317	324	anti-parallel
Strand 3	C	306	312	anti-parallel
Strand 4	C	428	434	anti-parallel
Strand 5	C	447	453	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	327	329	first strand
Strand 2	C	386	388	anti-parallel

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There are 11 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	530	534	first strand
Strand 2	C	524	527	anti-parallel
Strand 3	C	517	520	anti-parallel
Strand 4	C	554	558	parallel
Strand 5	C	490	494	parallel
Strand 6	C	574	579	parallel
Strand 7	C	609	618	parallel
Strand 8	C	634	639	parallel
Strand 9	C	656	661	parallel
Strand 10	C	664	669	anti-parallel
Strand 11	C	672	678	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	733	736	first strand
Strand 2	C	741	744	anti-parallel
Strand 3	C	851	854	parallel
Strand 4	C	768	770	parallel
Strand 5	C	795	796	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	10	first strand
Strand 2	D	21	28	anti-parallel
Strand 3	D	109	115	anti-parallel
Strand 4	D	99	104	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	181	183	first strand
Strand 2	D	190	192	anti-parallel
Strand 3	D	199	202	anti-parallel
Strand 4	D	205	206	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	272	275	first strand
Strand 2	D	258	260	anti-parallel
Strand 3	D	300	301	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	400	403	first strand
Strand 2	D	317	324	anti-parallel
Strand 3	D	306	312	anti-parallel
Strand 4	D	428	434	anti-parallel
Strand 5	D	447	453	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	327	329	first strand
Strand 2	D	386	388	anti-parallel

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There are 11 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	530	534	first strand
Strand 2	D	524	527	anti-parallel
Strand 3	D	517	520	anti-parallel
Strand 4	D	554	558	parallel
Strand 5	D	490	494	parallel
Strand 6	D	574	579	parallel
Strand 7	D	609	618	parallel
Strand 8	D	634	639	parallel
Strand 9	D	656	661	parallel
Strand 10	D	664	669	anti-parallel
Strand 11	D	672	678	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	733	736	first strand
Strand 2	D	741	744	anti-parallel
Strand 3	D	851	854	parallel
Strand 4	D	768	770	parallel
Strand 5	D	795	796	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7LGQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7LGQ