Analysis of interatomic Contacts of Structural Units in PDB entry:
7LI0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7LI0 entry

There are 4 chains in PDB entry 7LI0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 1	LYS 312
B	ASN 1	LYS 312
C	ASN 1	LYS 312
D	ASN 1	LYS 312

There are 76 helices in PDB entry 7LI0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	26	Right-handed alpha
Helix 2	AA2	A	35	47	Right-handed alpha
Helix 3	AA3	A	48	50	Right-handed 310
Helix 4	AA4	A	59	69	Right-handed alpha
Helix 5	AA5	A	77	84	Right-handed alpha
Helix 6	AA6	A	85	89	Right-handed 310
Helix 7	AA7	A	113	117	Right-handed 310
Helix 8	AA8	A	120	129	Right-handed 310
Helix 9	AA9	A	139	154	Right-handed alpha
Helix 10	AB1	A	154	168	Right-handed alpha
Helix 11	AB2	A	176	186	Right-handed alpha
Helix 12	AB3	A	196	206	Right-handed alpha
Helix 13	AB4	A	207	212	Right-handed 310
Helix 14	AB5	A	240	252	Right-handed alpha
Helix 15	AB6	A	253	261	Right-handed alpha
Helix 16	AB7	A	262	265	Right-handed 310
Helix 17	AB8	A	276	281	Right-handed alpha
Helix 18	AB9	A	293	298	Right-handed alpha
Helix 19	AC1	A	298	309	Right-handed alpha
Helix 20	AC2	B	10	26	Right-handed alpha
Helix 21	AC3	B	35	47	Right-handed alpha
Helix 22	AC4	B	48	50	Right-handed 310
Helix 23	AC5	B	59	69	Right-handed alpha
Helix 24	AC6	B	77	84	Right-handed alpha
Helix 25	AC7	B	85	89	Right-handed 310
Helix 26	AC8	B	113	117	Right-handed 310
Helix 27	AC9	B	120	129	Right-handed 310
Helix 28	AD1	B	139	154	Right-handed alpha
Helix 29	AD2	B	154	168	Right-handed alpha
Helix 30	AD3	B	176	186	Right-handed alpha
Helix 31	AD4	B	196	206	Right-handed alpha
Helix 32	AD5	B	207	212	Right-handed 310
Helix 33	AD6	B	240	252	Right-handed alpha
Helix 34	AD7	B	253	262	Right-handed alpha
Helix 35	AD8	B	263	265	Right-handed 310
Helix 36	AD9	B	276	281	Right-handed alpha
Helix 37	AE1	B	293	298	Right-handed alpha
Helix 38	AE2	B	298	310	Right-handed alpha
Helix 39	AE3	C	10	26	Right-handed alpha
Helix 40	AE4	C	35	47	Right-handed alpha
Helix 41	AE5	C	48	50	Right-handed 310
Helix 42	AE6	C	59	69	Right-handed alpha
Helix 43	AE7	C	77	84	Right-handed alpha
Helix 44	AE8	C	85	89	Right-handed 310
Helix 45	AE9	C	113	117	Right-handed 310
Helix 46	AF1	C	120	129	Right-handed 310
Helix 47	AF2	C	139	154	Right-handed alpha
Helix 48	AF3	C	154	168	Right-handed alpha
Helix 49	AF4	C	176	186	Right-handed alpha
Helix 50	AF5	C	196	206	Right-handed alpha
Helix 51	AF6	C	207	212	Right-handed 310
Helix 52	AF7	C	240	252	Right-handed alpha
Helix 53	AF8	C	253	261	Right-handed alpha
Helix 54	AF9	C	262	265	Right-handed 310
Helix 55	AG1	C	276	281	Right-handed alpha
Helix 56	AG2	C	293	298	Right-handed alpha
Helix 57	AG3	C	298	310	Right-handed alpha
Helix 58	AG4	D	10	26	Right-handed alpha
Helix 59	AG5	D	35	47	Right-handed alpha
Helix 60	AG6	D	48	50	Right-handed 310
Helix 61	AG7	D	59	69	Right-handed alpha
Helix 62	AG8	D	77	84	Right-handed alpha
Helix 63	AG9	D	85	89	Right-handed 310
Helix 64	AH1	D	113	117	Right-handed 310
Helix 65	AH2	D	120	129	Right-handed 310
Helix 66	AH3	D	139	154	Right-handed alpha
Helix 67	AH4	D	154	169	Right-handed alpha
Helix 68	AH5	D	176	186	Right-handed alpha
Helix 69	AH6	D	196	206	Right-handed alpha
Helix 70	AH7	D	207	212	Right-handed 310
Helix 71	AH8	D	240	252	Right-handed alpha
Helix 72	AH9	D	253	261	Right-handed alpha
Helix 73	AI1	D	262	265	Right-handed 310
Helix 74	AI2	D	276	281	Right-handed alpha
Helix 75	AI3	D	293	298	Right-handed alpha
Helix 76	AI4	D	298	309	Right-handed alpha

There are 16 sheets in PDB entry 7LI0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	33	first strand
Strand 2	A	2	7	parallel
Strand 3	A	54	58	parallel
Strand 4	A	227	235	anti-parallel
Strand 5	A	72	73	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	133	first strand
Strand 2	A	191	195	parallel
Strand 3	A	96	107	anti-parallel
Strand 4	A	227	235	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	268	first strand
Strand 2	A	96	107	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	214	216	first strand
Strand 2	A	96	107	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	33	first strand
Strand 2	B	2	7	parallel
Strand 3	B	54	58	parallel
Strand 4	B	227	235	anti-parallel
Strand 5	B	72	73	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	133	first strand
Strand 2	B	191	195	parallel
Strand 3	B	96	107	anti-parallel
Strand 4	B	227	235	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	267	268	first strand
Strand 2	B	96	107	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	214	216	first strand
Strand 2	B	96	107	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	33	first strand
Strand 2	C	2	7	parallel
Strand 3	C	54	58	parallel
Strand 4	C	227	235	anti-parallel
Strand 5	C	72	73	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	133	first strand
Strand 2	C	191	195	parallel
Strand 3	C	96	107	anti-parallel
Strand 4	C	227	235	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	267	268	first strand
Strand 2	C	96	107	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	214	216	first strand
Strand 2	C	96	107	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	33	first strand
Strand 2	D	2	7	parallel
Strand 3	D	54	58	parallel
Strand 4	D	227	235	anti-parallel
Strand 5	D	72	73	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	132	133	first strand
Strand 2	D	191	195	parallel
Strand 3	D	96	107	anti-parallel
Strand 4	D	227	235	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	267	268	first strand
Strand 2	D	96	107	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	214	216	first strand
Strand 2	D	96	107	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7LI0

Analysis of interatomic Contacts of Structural Units in PDB entry:
7LI0