Analysis of interatomic Contacts of Structural Units in PDB entry:
7LI3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7LI3 entry

There is 1 chain in PDB entry 7LI3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 558	GLU 2527

There are 66 helices in PDB entry 7LI3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	559	571	Right-handed alpha
Helix 2	AA2	A	585	596	Right-handed alpha
Helix 3	AA3	A	599	611	Right-handed alpha
Helix 4	AA4	A	625	638	Right-handed alpha
Helix 5	AA5	A	644	657	Right-handed alpha
Helix 6	AA6	A	659	661	Right-handed 310
Helix 7	AA7	A	662	670	Right-handed alpha
Helix 8	AA8	A	670	679	Right-handed alpha
Helix 9	AA9	A	688	703	Right-handed alpha
Helix 10	AB1	A	705	718	Right-handed alpha
Helix 11	AB2	A	721	730	Right-handed alpha
Helix 12	AB3	A	743	749	Right-handed alpha
Helix 13	AB4	A	754	764	Right-handed alpha
Helix 14	AB5	A	767	781	Right-handed alpha
Helix 15	AB6	A	786	795	Right-handed alpha
Helix 16	AB7	A	797	800	Right-handed 310
Helix 17	AB8	A	814	819	Right-handed alpha
Helix 18	AB9	A	820	822	Right-handed 310
Helix 19	AC1	A	833	853	Right-handed alpha
Helix 20	AC2	A	997	1001	Right-handed 310
Helix 21	AC3	A	1009	1013	Right-handed 310
Helix 22	AC4	A	1029	1034	Right-handed alpha
Helix 23	AC5	A	1053	1057	Right-handed 310
Helix 24	AC6	A	1101	1106	Right-handed alpha
Helix 25	AC7	A	1148	1152	Right-handed 310
Helix 26	AC8	A	1189	1194	Right-handed alpha
Helix 27	AC9	A	1213	1217	Right-handed 310
Helix 28	AD1	A	1241	1245	Right-handed 310
Helix 29	AD2	A	1261	1267	Right-handed 310
Helix 30	AD3	A	1285	1291	Right-handed 310
Helix 31	AD4	A	1316	1328	Right-handed alpha
Helix 32	AD5	A	1350	1355	Right-handed alpha
Helix 33	AD6	A	1401	1408	Right-handed 310
Helix 34	AD7	A	1426	1431	Right-handed alpha
Helix 35	AD8	A	1431	1442	Right-handed alpha
Helix 36	AD9	A	1463	1465	Right-handed 310
Helix 37	AE1	A	1466	1473	Right-handed alpha
Helix 38	AE2	A	1494	1509	Right-handed alpha
Helix 39	AE3	A	1517	1520	Right-handed 310
Helix 40	AE4	A	1525	1538	Right-handed alpha
Helix 41	AE5	A	1550	1560	Right-handed alpha
Helix 42	AE6	A	1568	1579	Right-handed alpha
Helix 43	AE7	A	1599	1607	Right-handed alpha
Helix 44	AE8	A	1644	1654	Right-handed alpha
Helix 45	AE9	A	1704	1712	Right-handed alpha
Helix 46	AF1	A	1770	1792	Right-handed alpha
Helix 47	AF2	A	1829	1834	Right-handed alpha
Helix 48	AF3	A	1853	1855	Right-handed 310
Helix 49	AF4	A	1865	1869	Right-handed 310
Helix 50	AF5	A	1913	1925	Right-handed alpha
Helix 51	AF6	A	1954	1962	Right-handed alpha
Helix 52	AF7	A	1969	1986	Right-handed alpha
Helix 53	AF8	A	1987	1989	Right-handed 310
Helix 54	AF9	A	2017	2026	Right-handed alpha
Helix 55	AG1	A	2040	2045	Right-handed alpha
Helix 56	AG2	A	2051	2068	Right-handed alpha
Helix 57	AG3	A	2070	2077	Right-handed alpha
Helix 58	AG4	A	2079	2086	Right-handed alpha
Helix 59	AG5	A	2094	2099	Right-handed alpha
Helix 60	AG6	A	2107	2115	Right-handed alpha
Helix 61	AG7	A	2118	2122	Right-handed 310
Helix 62	AG8	A	2124	2131	Right-handed alpha
Helix 63	AG9	A	2278	2282	Right-handed 310
Helix 64	AH1	A	2389	2394	Right-handed alpha
Helix 65	AH2	A	2402	2407	Right-handed 310
Helix 66	AH3	A	2499	2527	Right-handed alpha

There are 18 sheets in PDB entry 7LI3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	802	804	first strand
Strand 2	A	986	988	parallel
Strand 3	A	1015	1017	parallel
Strand 4	A	1040	1041	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1177	1179	first strand
Strand 2	A	1200	1202	parallel
Strand 3	A	1224	1226	parallel
Strand 4	A	1249	1251	parallel
Strand 5	A	1272	1274	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1329	1331	first strand
Strand 2	A	1522	1524	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1336	1339	first strand
Strand 2	A	1387	1394	parallel
Strand 3	A	1376	1379	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1415	1418	first strand
Strand 2	A	1447	1450	parallel
Strand 3	A	1482	1486	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1547	1549	first strand
Strand 2	A	1595	1598	anti-parallel
Strand 3	A	1582	1583	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1690	1692	first strand
Strand 2	A	1765	1768	anti-parallel
Strand 3	A	1746	1750	anti-parallel
Strand 4	A	1740	1743	anti-parallel
Strand 5	A	1730	1731	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1811	1814	first strand
Strand 2	A	1825	1828	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1840	1841	first strand
Strand 2	A	1850	1851	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1896	1898	first strand
Strand 2	A	1901	1905	anti-parallel
Strand 3	A	1944	1948	anti-parallel
Strand 4	A	1935	1939	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2140	2145	first strand
Strand 2	A	2488	2497	anti-parallel
Strand 3	A	2466	2478	anti-parallel
Strand 4	A	2457	2463	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2155	2156	first strand
Strand 2	A	2168	2169	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2178	2182	first strand
Strand 2	A	2189	2193	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2199	2201	first strand
Strand 2	A	2212	2219	anti-parallel
Strand 3	A	2204	2207	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2199	2201	first strand
Strand 2	A	2212	2219	anti-parallel
Strand 3	A	2224	2227	anti-parallel
Strand 4	A	2235	2237	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2318	2319	first strand
Strand 2	A	2322	2323	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2354	2359	first strand
Strand 2	A	2363	2367	anti-parallel
Strand 3	A	2372	2376	anti-parallel
Strand 4	A	2385	2388	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2416	2419	first strand
Strand 2	A	2425	2428	anti-parallel
Strand 3	A	2434	2437	anti-parallel
Strand 4	A	2444	2447	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7LI3

Analysis of interatomic Contacts of Structural Units in PDB entry:
7LI3