Analysis of interatomic Contacts of Structural Units in PDB entry:
7LI9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7LI9 entry

There are 3 chains in PDB entry 7LI9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 79PRO 617
B
 GLN 20THR 137
C
 ASP 21ILE 130
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 7LI9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
81 94Right-handed alpha
Helix 2
AA2
A
99 113Right-handed alpha
Helix 3
AA3
A
117 129Right-handed alpha
Helix 4
AA4
A
129 144Right-handed alpha
Helix 5
AA5
A
148 153Right-handed 310
Helix 6
AA6
A
159 190Right-handed alpha
Helix 7
AA7
A
195 199Right-handed 310
Helix 8
AA8
A
226 235Right-handed alpha
Helix 9
AA9
A
238 242Right-handed 310
Helix 10
AB1
A
252 268Right-handed alpha
Helix 11
AB2
A
278 285Right-handed alpha
Helix 12
AB3
A
286 301Right-handed alpha
Helix 13
AB4
A
308 313Right-handed alpha
Helix 14
AB5
A
316 320Right-handed 310
Helix 15
AB6
A
325 338Right-handed alpha
Helix 16
AB7
A
342 349Right-handed alpha
Helix 17
AB8
A
359 391Right-handed alpha
Helix 18
AB9
A
393 397Right-handed 310
Helix 19
AC1
A
405 415Right-handed alpha
Helix 20
AC2
A
419 451Right-handed alpha
Helix 21
AC3
A
465 477Right-handed alpha
Helix 22
AC4
A
478 482Right-handed 310
Helix 23
AC5
A
484 495Right-handed alpha
Helix 24
AC6
A
498 515Right-handed alpha
Helix 25
AC7
A
517 529Right-handed alpha
Helix 26
AC8
A
534 558Right-handed alpha
Helix 27
AC9
A
572 585Right-handed alpha
Helix 28
AD1
A
587 600Right-handed alpha
Helix 29
AD2
A
603 613Right-handed alpha
Helix 30
AD3
B
47 51Right-handed 310
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There are 7 sheets in PDB entry 7LI9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
564 565first strand
Strand 2
A
568 569anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 25first strand
Strand 2
B
38 44anti-parallel
Strand 3
B
97 102anti-parallel
Strand 4
B
87 92anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 54first strand
Strand 2
B
116 117anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 66first strand
Strand 2
B
56 58anti-parallel
Strand 3
B
112 113anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
30 31first strand
Strand 2
C
127 128parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
77 78first strand
Strand 2
C
69 73anti-parallel
Strand 3
C
57 61anti-parallel
Strand 4
C
112 114anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
87 89first strand
Strand 2
C
96 98anti-parallel
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