Analysis of interatomic Contacts of Structural Units in PDB entry:
7LIA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7LIA entry

There are 3 chains in PDB entry 7LIA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 79PRO 617
B
 GLN 20THR 137
C
 ASP 21ILE 130
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 7LIA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
84 97Right-handed alpha
Helix 2
AA2
A
99 112Right-handed alpha
Helix 3
AA3
A
114 116Right-handed 310
Helix 4
AA4
A
117 129Right-handed alpha
Helix 5
AA5
A
129 144Right-handed alpha
Helix 6
AA6
A
150 155Right-handed alpha
Helix 7
AA7
A
156 159Right-handed 310
Helix 8
AA8
A
160 190Right-handed alpha
Helix 9
AA9
A
226 235Right-handed alpha
Helix 10
AB1
A
238 242Right-handed 310
Helix 11
AB2
A
252 270Right-handed alpha
Helix 12
AB3
A
273 285Right-handed alpha
Helix 13
AB4
A
286 300Right-handed alpha
Helix 14
AB5
A
304 313Right-handed alpha
Helix 15
AB6
A
318 322Right-handed 310
Helix 16
AB7
A
323 338Right-handed alpha
Helix 17
AB8
A
343 350Right-handed alpha
Helix 18
AB9
A
356 391Right-handed alpha
Helix 19
AC1
A
403 417Right-handed alpha
Helix 20
AC2
A
419 454Right-handed alpha
Helix 21
AC3
A
455 458Right-handed 310
Helix 22
AC4
A
461 478Right-handed alpha
Helix 23
AC5
A
484 496Right-handed alpha
Helix 24
AC6
A
498 514Right-handed alpha
Helix 25
AC7
A
517 530Right-handed alpha
Helix 26
AC8
A
534 558Right-handed alpha
Helix 27
AC9
A
571 587Right-handed alpha
Helix 28
AD1
A
587 600Right-handed alpha
Helix 29
AD2
A
603 613Right-handed alpha
Helix 30
AD3
B
47 51Right-handed 310
Helix 31
AD4
B
81 85Right-handed 310
Helix 32
AD5
B
106 110Right-handed 310
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There are 6 sheets in PDB entry 7LIA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
564 565first strand
Strand 2
A
568 569anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 25first strand
Strand 2
B
37 44anti-parallel
Strand 3
B
97 102anti-parallel
Strand 4
B
87 92anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 79first strand
Strand 2
B
64 70anti-parallel
Strand 3
B
53 58anti-parallel
Strand 4
B
112 118anti-parallel
Strand 5
B
127 129anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 79first strand
Strand 2
B
64 70anti-parallel
Strand 3
B
53 58anti-parallel
Strand 4
B
112 118anti-parallel
Strand 5
B
134 135anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
24 27first strand
Strand 2
C
39 45anti-parallel
Strand 3
C
94 99anti-parallel
Strand 4
C
86 91anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
30 32first strand
Strand 2
C
126 129parallel
Strand 3
C
109 114anti-parallel
Strand 4
C
57 62anti-parallel
Strand 5
C
69 73anti-parallel
Strand 6
C
77 78anti-parallel
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