Analysis of interatomic Contacts of Structural Units in PDB entry:
7LIU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7LIU entry

There are 4 chains in PDB entry 7LIU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 135TYR 576
B
 ASP 135TYR 576
X
 G 701 C 714
Y
 G 701 C 714
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 46 helices in PDB entry 7LIU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
143 151Right-handed alpha
Helix 2
AA2
A
161 166Right-handed 310
Helix 3
AA3
A
181 185Right-handed 310
Helix 4
AA4
A
188 198Right-handed alpha
Helix 5
AA5
A
204 216Right-handed alpha
Helix 6
AA6
A
229 246Right-handed alpha
Helix 7
AA7
A
247 253Right-handed alpha
Helix 8
AA8
A
275 290Right-handed alpha
Helix 9
AA9
A
305 315Right-handed alpha
Helix 10
AB1
A
323 332Right-handed alpha
Helix 11
AB2
A
348 353Right-handed alpha
Helix 12
AB3
A
357 366Right-handed alpha
Helix 13
AB4
A
386 393Right-handed alpha
Helix 14
AB5
A
394 397Right-handed 310
Helix 15
AB6
A
423 425Right-handed 310
Helix 16
AB7
A
426 438Right-handed alpha
Helix 17
AB8
A
450 464Right-handed alpha
Helix 18
AB9
A
476 489Right-handed alpha
Helix 19
AC1
A
499 502Right-handed 310
Helix 20
AC2
A
521 530Right-handed alpha
Helix 21
AC3
A
546 551Right-handed 310
Helix 22
AC4
A
552 563Right-handed alpha
Helix 23
AC5
A
568 575Right-handed alpha
Helix 24
AC6
B
143 151Right-handed alpha
Helix 25
AC7
B
161 166Right-handed 310
Helix 26
AC8
B
181 185Right-handed 310
Helix 27
AC9
B
188 198Right-handed alpha
Helix 28
AD1
B
204 216Right-handed alpha
Helix 29
AD2
B
229 246Right-handed alpha
Helix 30
AD3
B
247 253Right-handed alpha
Helix 31
AD4
B
275 290Right-handed alpha
Helix 32
AD5
B
305 315Right-handed alpha
Helix 33
AD6
B
323 333Right-handed alpha
Helix 34
AD7
B
348 353Right-handed alpha
Helix 35
AD8
B
357 366Right-handed alpha
Helix 36
AD9
B
386 393Right-handed alpha
Helix 37
AE1
B
394 397Right-handed 310
Helix 38
AE2
B
423 425Right-handed 310
Helix 39
AE3
B
426 438Right-handed alpha
Helix 40
AE4
B
450 464Right-handed alpha
Helix 41
AE5
B
476 489Right-handed alpha
Helix 42
AE6
B
499 502Right-handed 310
Helix 43
AE7
B
521 530Right-handed alpha
Helix 44
AE8
B
546 551Right-handed 310
Helix 45
AE9
B
552 563Right-handed alpha
Helix 46
AF1
B
568 575Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 7LIU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 171first strand
Strand 2
A
401 404anti-parallel
Strand 3
A
220 223parallel
Strand 4
A
377 382parallel
Strand 5
A
343 347parallel
Strand 6
A
269 272parallel
Strand 7
A
319 322parallel
Strand 8
A
297 300parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
415 421first strand
Strand 2
A
539 545parallel
Strand 3
A
510 515parallel
Strand 4
A
443 447parallel
Strand 5
A
494 497parallel
Strand 6
A
468 471parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 171first strand
Strand 2
B
401 404anti-parallel
Strand 3
B
220 223parallel
Strand 4
B
377 382parallel
Strand 5
B
343 347parallel
Strand 6
B
269 272parallel
Strand 7
B
319 322parallel
Strand 8
B
297 300parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
415 421first strand
Strand 2
B
539 545parallel
Strand 3
B
510 515parallel
Strand 4
B
443 447parallel
Strand 5
B
494 497parallel
Strand 6
B
468 471parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il