Analysis of interatomic Contacts of Structural Units in PDB entry:
7LIZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7LIZ entry

There are 5 chains in PDB entry 7LIZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 309LYS 423
B
 MET 1GLY 71
B
 CYS 73SER 177
C
 MET 1GLY 71
C
 CYS 73SER 177
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 7LIZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
315 320Right-handed 310
Helix 2
AA2
A
357 373Right-handed alpha
Helix 3
AA3
A
380 386Right-handed 310
Helix 4
AA4
B
2 9Right-handed alpha
Helix 5
AA5
B
20 31Right-handed alpha
Helix 6
AA6
B
33 47Right-handed alpha
Helix 7
AA7
B
47 63Right-handed alpha
Helix 8
AA8
B
64 68Right-handed 310
Helix 9
AA9
B
75 100Right-handed alpha
Helix 10
AB1
B
102 109Right-handed alpha
Helix 11
AB2
B
112 121Right-handed alpha
Helix 12
AB3
B
123 143Right-handed alpha
Helix 13
AB4
B
158 177Right-handed alpha
Helix 14
AB5
C
2 11Right-handed alpha
Helix 15
AB6
C
20 31Right-handed alpha
Helix 16
AB7
C
33 46Right-handed alpha
Helix 17
AB8
C
47 63Right-handed alpha
Helix 18
AB9
C
64 68Right-handed 310
Helix 19
AC1
C
75 100Right-handed alpha
Helix 20
AC2
C
102 109Right-handed alpha
Helix 21
AC3
C
112 121Right-handed alpha
Helix 22
AC4
C
123 144Right-handed alpha
Helix 23
AC5
C
158 177Right-handed alpha
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There are 2 sheets in PDB entry 7LIZ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
330 337first strand
Strand 2
A
346 353anti-parallel
Strand 3
B
17 19anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
393 400first strand
Strand 2
A
409 416anti-parallel
Strand 3
C
15 19anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il