Analysis of interatomic Contacts of Structural Units in PDB entry:
7LJF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7LJF entry

There are 6 chains in PDB entry 7LJF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 97	THR 601
B	PRO 97	THR 601
C	PRO 97	LEU 587
D	PRO 97	ALA 236
E	PRO 97	ALA 236
F	PRO 97	LEU 587

There are 71 helices in PDB entry 7LJF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	250	254	Right-handed 310
Helix 2	AA2	A	257	268	Right-handed alpha
Helix 3	AA3	A	268	274	Right-handed alpha
Helix 4	AA4	A	274	282	Right-handed alpha
Helix 5	AA5	A	298	313	Right-handed alpha
Helix 6	AA6	A	334	339	Right-handed 310
Helix 7	AA7	A	344	361	Right-handed alpha
Helix 8	AA8	A	372	376	Right-handed 310
Helix 9	AA9	A	393	404	Right-handed alpha
Helix 10	AB1	A	422	426	Right-handed 310
Helix 11	AB2	A	441	451	Right-handed alpha
Helix 12	AB3	A	460	466	Right-handed alpha
Helix 13	AB4	A	470	488	Right-handed alpha
Helix 14	AB5	A	490	492	Right-handed 310
Helix 15	AB6	A	511	513	Right-handed 310
Helix 16	AB7	A	516	538	Right-handed alpha
Helix 17	AB8	A	543	558	Right-handed alpha
Helix 18	AB9	A	559	565	Right-handed 310
Helix 19	AC1	A	566	578	Right-handed alpha
Helix 20	AC2	B	190	193	Right-handed 310
Helix 21	AC3	B	250	254	Right-handed 310
Helix 22	AC4	B	257	274	Right-handed alpha
Helix 23	AC5	B	274	282	Right-handed alpha
Helix 24	AC6	B	298	313	Right-handed alpha
Helix 25	AC7	B	345	362	Right-handed alpha
Helix 26	AC8	B	372	376	Right-handed 310
Helix 27	AC9	B	393	403	Right-handed alpha
Helix 28	AD1	B	404	406	Right-handed 310
Helix 29	AD2	B	422	427	Right-handed alpha
Helix 30	AD3	B	441	453	Right-handed alpha
Helix 31	AD4	B	460	467	Right-handed alpha
Helix 32	AD5	B	470	488	Right-handed alpha
Helix 33	AD6	B	511	513	Right-handed 310
Helix 34	AD7	B	515	538	Right-handed alpha
Helix 35	AD8	B	543	561	Right-handed alpha
Helix 36	AD9	B	566	576	Right-handed alpha
Helix 37	AE1	C	250	254	Right-handed 310
Helix 38	AE2	C	261	268	Right-handed alpha
Helix 39	AE3	C	268	274	Right-handed alpha
Helix 40	AE4	C	274	282	Right-handed alpha
Helix 41	AE5	C	298	311	Right-handed alpha
Helix 42	AE6	C	333	339	Right-handed alpha
Helix 43	AE7	C	344	362	Right-handed alpha
Helix 44	AE8	C	393	405	Right-handed alpha
Helix 45	AE9	C	422	427	Right-handed 310
Helix 46	AF1	C	441	453	Right-handed alpha
Helix 47	AF2	C	460	468	Right-handed alpha
Helix 48	AF3	C	470	488	Right-handed alpha
Helix 49	AF4	C	490	492	Right-handed 310
Helix 50	AF5	C	511	513	Right-handed 310
Helix 51	AF6	C	515	538	Right-handed alpha
Helix 52	AF7	C	543	554	Right-handed alpha
Helix 53	AF8	C	555	557	Right-handed 310
Helix 54	AF9	E	189	193	Right-handed 310
Helix 55	AG1	F	190	193	Right-handed 310
Helix 56	AG2	F	250	254	Right-handed 310
Helix 57	AG3	F	257	274	Right-handed alpha
Helix 58	AG4	F	274	281	Right-handed alpha
Helix 59	AG5	F	298	313	Right-handed alpha
Helix 60	AG6	F	334	339	Right-handed alpha
Helix 61	AG7	F	344	361	Right-handed alpha
Helix 62	AG8	F	372	376	Right-handed 310
Helix 63	AG9	F	393	404	Right-handed alpha
Helix 64	AH1	F	422	427	Right-handed 310
Helix 65	AH2	F	441	453	Right-handed alpha
Helix 66	AH3	F	460	467	Right-handed alpha
Helix 67	AH4	F	470	488	Right-handed alpha
Helix 68	AH5	F	490	492	Right-handed 310
Helix 69	AH6	F	511	514	Right-handed 310
Helix 70	AH7	F	515	538	Right-handed alpha
Helix 71	AH8	F	543	557	Right-handed alpha

There are 18 sheets in PDB entry 7LJF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	152	first strand
Strand 2	A	140	142	anti-parallel
Strand 3	A	101	106	anti-parallel
Strand 4	A	112	117	anti-parallel
Strand 5	A	120	125	anti-parallel
Strand 6	B	99	107	anti-parallel
Strand 7	B	112	117	anti-parallel
Strand 8	B	120	125	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	152	first strand
Strand 2	A	140	142	anti-parallel
Strand 3	A	101	106	anti-parallel
Strand 4	A	112	117	anti-parallel
Strand 5	A	120	125	anti-parallel
Strand 6	B	99	107	anti-parallel
Strand 7	B	139	143	anti-parallel
Strand 8	B	149	155	anti-parallel

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There are 15 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	222	first strand
Strand 2	A	159	167	anti-parallel
Strand 3	F	184	188	anti-parallel
Strand 4	F	228	232	parallel
Strand 5	F	219	223	anti-parallel
Strand 6	F	159	167	anti-parallel
Strand 7	E	183	187	anti-parallel
Strand 8	E	228	232	parallel
Strand 9	E	219	223	anti-parallel
Strand 10	E	159	167	anti-parallel
Strand 11	D	183	186	anti-parallel
Strand 12	D	174	177	anti-parallel
Strand 13	D	159	167	anti-parallel
Strand 14	D	219	223	anti-parallel
Strand 15	D	228	232	anti-parallel

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There are 14 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	228	232	first strand
Strand 2	D	219	223	anti-parallel
Strand 3	D	159	167	anti-parallel
Strand 4	C	183	187	anti-parallel
Strand 5	C	228	233	parallel
Strand 6	C	219	223	anti-parallel
Strand 7	C	159	167	anti-parallel
Strand 8	B	183	188	anti-parallel
Strand 9	B	173	177	anti-parallel
Strand 10	B	159	167	anti-parallel
Strand 11	A	184	187	anti-parallel
Strand 12	A	173	177	anti-parallel
Strand 13	A	159	167	anti-parallel
Strand 14	A	219	222	anti-parallel

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There are 13 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	222	first strand
Strand 2	A	159	167	anti-parallel
Strand 3	F	184	188	anti-parallel
Strand 4	F	173	177	anti-parallel
Strand 5	F	159	167	anti-parallel
Strand 6	E	183	187	anti-parallel
Strand 7	E	173	177	anti-parallel
Strand 8	E	159	167	anti-parallel
Strand 9	D	183	186	anti-parallel
Strand 10	D	174	177	anti-parallel
Strand 11	D	159	167	anti-parallel
Strand 12	D	219	223	anti-parallel
Strand 13	D	228	232	anti-parallel

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There are 14 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	228	232	first strand
Strand 2	D	219	223	anti-parallel
Strand 3	D	159	167	anti-parallel
Strand 4	C	183	187	anti-parallel
Strand 5	C	173	177	anti-parallel
Strand 6	C	159	167	anti-parallel
Strand 7	B	183	188	anti-parallel
Strand 8	B	228	232	parallel
Strand 9	B	219	223	anti-parallel
Strand 10	B	159	167	anti-parallel
Strand 11	A	184	187	anti-parallel
Strand 12	A	173	177	anti-parallel
Strand 13	A	159	167	anti-parallel
Strand 14	A	219	222	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	330	332	first strand
Strand 2	A	368	370	parallel
Strand 3	A	411	413	parallel
Strand 4	A	288	292	parallel
Strand 5	A	431	436	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	505	509	first strand
Strand 2	A	494	500	anti-parallel
Strand 3	A	581	586	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	329	333	first strand
Strand 2	B	366	371	parallel
Strand 3	B	409	413	parallel
Strand 4	B	288	292	parallel
Strand 5	B	433	436	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	507	509	first strand
Strand 2	B	494	500	anti-parallel
Strand 3	B	581	586	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	125	first strand
Strand 2	C	112	117	anti-parallel
Strand 3	C	101	108	anti-parallel
Strand 4	C	140	142	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	328	332	first strand
Strand 2	C	366	371	parallel
Strand 3	C	409	414	parallel
Strand 4	C	288	292	parallel
Strand 5	C	431	436	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	505	509	first strand
Strand 2	C	494	500	anti-parallel
Strand 3	C	581	586	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	125	first strand
Strand 2	D	112	117	anti-parallel
Strand 3	D	101	107	anti-parallel
Strand 4	D	140	142	anti-parallel
Strand 5	D	151	152	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	148	149	first strand
Strand 2	E	120	126	parallel
Strand 3	E	112	117	anti-parallel
Strand 4	E	101	107	anti-parallel
Strand 5	E	140	142	anti-parallel
Strand 6	E	151	152	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	120	124	first strand
Strand 2	F	113	117	anti-parallel
Strand 3	F	101	107	anti-parallel
Strand 4	F	140	142	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	328	333	first strand
Strand 2	F	366	371	parallel
Strand 3	F	409	415	parallel
Strand 4	F	288	292	parallel
Strand 5	F	433	436	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	505	509	first strand
Strand 2	F	494	500	anti-parallel
Strand 3	F	581	586	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7LJF

Analysis of interatomic Contacts of Structural Units in PDB entry:
7LJF