Analysis of interatomic Contacts of Structural Units in PDB entry:
7LJI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7LJI entry

There are 2 chains in PDB entry 7LJI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 6GLN 405
B
 LYS 6GLN 405
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 7LJI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 12Right-handed 310
Helix 2
AA2
A
13 26Right-handed alpha
Helix 3
AA3
A
26 39Right-handed alpha
Helix 4
AA4
A
47 61Right-handed alpha
Helix 5
AA5
A
122 139Right-handed alpha
Helix 6
AA6
A
156 160Right-handed 310
Helix 7
AA7
A
161 170Right-handed alpha
Helix 8
AA8
A
220 233Right-handed alpha
Helix 9
AA9
A
273 299Right-handed alpha
Helix 10
AB1
A
325 338Right-handed alpha
Helix 11
AB2
A
350 357Right-handed alpha
Helix 12
AB3
A
383 403Right-handed alpha
Helix 13
AB4
B
6 12Right-handed 310
Helix 14
AB5
B
13 26Right-handed alpha
Helix 15
AB6
B
26 39Right-handed alpha
Helix 16
AB7
B
47 61Right-handed alpha
Helix 17
AB8
B
122 140Right-handed alpha
Helix 18
AB9
B
156 160Right-handed 310
Helix 19
AC1
B
161 170Right-handed alpha
Helix 20
AC2
B
220 233Right-handed alpha
Helix 21
AC3
B
273 299Right-handed alpha
Helix 22
AC4
B
325 338Right-handed alpha
Helix 23
AC5
B
350 357Right-handed alpha
Helix 24
AC6
B
383 403Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 7LJI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 68first strand
Strand 2
A
74 78anti-parallel
Strand 3
A
146 152anti-parallel
Strand 4
A
88 94parallel
Strand 5
A
177 183parallel
Strand 6
A
361 364parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 110first strand
Strand 2
A
113 115anti-parallel
Strand 3
A
379 381anti-parallel
Strand 4
A
369 371anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
319 320first strand
Strand 2
A
190 195anti-parallel
Strand 3
A
343 347parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 252first strand
Strand 2
A
262 271anti-parallel
Strand 3
A
197 206anti-parallel
Strand 4
A
307 316anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 211first strand
Strand 2
A
258 259anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 68first strand
Strand 2
B
74 78anti-parallel
Strand 3
B
147 152anti-parallel
Strand 4
B
88 94parallel
Strand 5
B
177 183parallel
Strand 6
B
361 364parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 110first strand
Strand 2
B
113 115anti-parallel
Strand 3
B
379 381anti-parallel
Strand 4
B
369 371anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
319 320first strand
Strand 2
B
190 195anti-parallel
Strand 3
B
343 347parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
243 252first strand
Strand 2
B
262 271anti-parallel
Strand 3
B
197 206anti-parallel
Strand 4
B
307 316anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
210 211first strand
Strand 2
B
258 259anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il