Analysis of interatomic Contacts of Structural Units in PDB entry:
7LJM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7LJM entry

There are 2 chains in PDB entry 7LJM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3PRO 354
B
 ASN 4PRO 354
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 7LJM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 15Right-handed alpha
Helix 2
AA2
A
17 38Right-handed alpha
Helix 3
AA3
A
39 42Right-handed 310
Helix 4
AA4
A
51 56Right-handed alpha
Helix 5
AA5
A
62 66Right-handed 310
Helix 6
AA6
A
84 90Right-handed alpha
Helix 7
AA7
A
92 100Right-handed alpha
Helix 8
AA8
A
130 142Right-handed alpha
Helix 9
AA9
A
143 148Right-handed alpha
Helix 10
AB1
A
183 187Right-handed 310
Helix 11
AB2
A
206 221Right-handed alpha
Helix 12
AB3
A
223 239Right-handed alpha
Helix 13
AB4
A
249 260Right-handed alpha
Helix 14
AB5
A
266 282Right-handed alpha
Helix 15
AB6
A
282 288Right-handed alpha
Helix 16
AB7
A
309 333Right-handed alpha
Helix 17
AB8
A
335 348Right-handed alpha
Helix 18
AB9
B
5 13Right-handed alpha
Helix 19
AC1
B
17 38Right-handed alpha
Helix 20
AC2
B
38 43Right-handed alpha
Helix 21
AC3
B
84 91Right-handed alpha
Helix 22
AC4
B
92 100Right-handed alpha
Helix 23
AC5
B
130 142Right-handed alpha
Helix 24
AC6
B
143 148Right-handed alpha
Helix 25
AC7
B
183 188Right-handed alpha
Helix 26
AC8
B
206 221Right-handed alpha
Helix 27
AC9
B
223 239Right-handed alpha
Helix 28
AD1
B
240 243Right-handed 310
Helix 29
AD2
B
248 260Right-handed alpha
Helix 30
AD3
B
266 282Right-handed alpha
Helix 31
AD4
B
282 288Right-handed alpha
Helix 32
AD5
B
309 333Right-handed alpha
Helix 33
AD6
B
335 348Right-handed alpha
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There are 4 sheets in PDB entry 7LJM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 50first strand
Strand 2
A
69 76anti-parallel
Strand 3
A
119 126parallel
Strand 4
A
110 114anti-parallel
Strand 5
A
104 107anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 195first strand
Strand 2
A
202 205anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 51first strand
Strand 2
B
69 76anti-parallel
Strand 3
B
119 126parallel
Strand 4
B
110 114anti-parallel
Strand 5
B
104 107anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 195first strand
Strand 2
B
202 205anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il