Analysis of interatomic Contacts of Structural Units in PDB entry:
7LJR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7LJR entry

There are 5 chains in PDB entry 7LJR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 27	SER 1147
B	ALA 27	SER 1147
C	ALA 27	SER 1147
S	GLN 20	CYS 245
T	PRO 27	GLU 232

There are 82 helices in PDB entry 7LJR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	196	200	Right-handed 310
Helix 2	AA2	A	294	303	Right-handed alpha
Helix 3	AA3	A	338	343	Right-handed alpha
Helix 4	AA4	A	349	353	Right-handed 310
Helix 5	AA5	A	365	370	Right-handed alpha
Helix 6	AA6	A	383	389	Right-handed 310
Helix 7	AA7	A	405	410	Right-handed 310
Helix 8	AA8	A	416	422	Right-handed alpha
Helix 9	AA9	A	616	620	Right-handed 310
Helix 10	AB1	A	737	744	Right-handed alpha
Helix 11	AB2	A	746	754	Right-handed alpha
Helix 12	AB3	A	755	757	Right-handed 310
Helix 13	AB4	A	758	783	Right-handed alpha
Helix 14	AB5	A	816	826	Right-handed alpha
Helix 15	AB6	A	866	884	Right-handed alpha
Helix 16	AB7	A	886	891	Right-handed alpha
Helix 17	AB8	A	897	908	Right-handed alpha
Helix 18	AB9	A	913	919	Right-handed alpha
Helix 19	AC1	A	919	939	Right-handed alpha
Helix 20	AC2	A	941	944	Right-handed 310
Helix 21	AC3	A	945	965	Right-handed alpha
Helix 22	AC4	A	966	968	Right-handed 310
Helix 23	AC5	A	976	984	Right-handed alpha
Helix 24	AC6	A	985	1033	Right-handed alpha
Helix 25	AC7	A	1141	1145	Right-handed 310
Helix 26	AC8	B	294	303	Right-handed alpha
Helix 27	AC9	B	337	342	Right-handed alpha
Helix 28	AD1	B	366	371	Right-handed alpha
Helix 29	AD2	B	372	375	Right-handed 310
Helix 30	AD3	B	383	387	Right-handed 310
Helix 31	AD4	B	616	620	Right-handed 310
Helix 32	AD5	B	737	744	Right-handed alpha
Helix 33	AD6	B	746	756	Right-handed alpha
Helix 34	AD7	B	758	783	Right-handed alpha
Helix 35	AD8	B	801	805	Right-handed 310
Helix 36	AD9	B	816	825	Right-handed alpha
Helix 37	AE1	B	866	884	Right-handed alpha
Helix 38	AE2	B	897	907	Right-handed alpha
Helix 39	AE3	B	908	910	Right-handed 310
Helix 40	AE4	B	913	918	Right-handed alpha
Helix 41	AE5	B	919	941	Right-handed alpha
Helix 42	AE6	B	942	944	Right-handed 310
Helix 43	AE7	B	945	967	Right-handed alpha
Helix 44	AE8	B	976	982	Right-handed alpha
Helix 45	AE9	B	985	1033	Right-handed alpha
Helix 46	AF1	B	1116	1118	Right-handed 310
Helix 47	AF2	B	1127	1129	Right-handed 310
Helix 48	AF3	B	1141	1146	Right-handed 310
Helix 49	AF4	C	197	200	Right-handed 310
Helix 50	AF5	C	294	303	Right-handed alpha
Helix 51	AF6	C	337	342	Right-handed 310
Helix 52	AF7	C	366	371	Right-handed alpha
Helix 53	AF8	C	383	390	Right-handed 310
Helix 54	AF9	C	405	409	Right-handed 310
Helix 55	AG1	C	417	422	Right-handed alpha
Helix 56	AG2	C	616	620	Right-handed 310
Helix 57	AG3	C	737	744	Right-handed alpha
Helix 58	AG4	C	746	756	Right-handed alpha
Helix 59	AG5	C	758	783	Right-handed alpha
Helix 60	AG6	C	801	805	Right-handed 310
Helix 61	AG7	C	816	826	Right-handed alpha
Helix 62	AG8	C	866	884	Right-handed alpha
Helix 63	AG9	C	886	891	Right-handed alpha
Helix 64	AH1	C	897	908	Right-handed alpha
Helix 65	AH2	C	913	918	Right-handed alpha
Helix 66	AH3	C	919	941	Right-handed alpha
Helix 67	AH4	C	942	944	Right-handed 310
Helix 68	AH5	C	945	967	Right-handed alpha
Helix 69	AH6	C	976	984	Right-handed alpha
Helix 70	AH7	C	985	1033	Right-handed alpha
Helix 71	AH8	C	1116	1118	Right-handed 310
Helix 72	AH9	C	1127	1129	Right-handed 310
Helix 73	AI1	C	1141	1145	Right-handed 310
Helix 74	AI2	S	44	50	Right-handed 310
Helix 75	AI3	S	106	110	Right-handed 310
Helix 76	AI4	S	120	124	Right-handed 310
Helix 77	AI5	S	156	158	Right-handed 310
Helix 78	AI6	S	185	187	Right-handed 310
Helix 79	AI7	S	216	218	Right-handed 310
Helix 80	AI8	S	230	233	Right-handed 310
Helix 81	AI9	T	140	147	Right-handed alpha
Helix 82	AJ1	T	202	208	Right-handed alpha

There are 50 sheets in PDB entry 7LJR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	30	first strand
Strand 2	A	61	66	anti-parallel
Strand 3	A	264	269	anti-parallel
Strand 4	A	90	95	anti-parallel
Strand 5	A	188	195	anti-parallel
Strand 6	A	201	209	anti-parallel
Strand 7	A	222	229	anti-parallel
Strand 8	A	36	37	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	44	first strand
Strand 2	C	565	567	parallel
Strand 3	C	573	577	anti-parallel
Strand 4	C	584	588	anti-parallel
Strand 5	C	546	554	anti-parallel
Strand 6	C	538	543	anti-parallel
Strand 7	C	324	328	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	55	first strand
Strand 2	A	271	279	anti-parallel
Strand 3	A	285	290	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	A	237	242	anti-parallel
Strand 3	A	101	107	anti-parallel
Strand 4	A	116	122	anti-parallel
Strand 5	A	125	129	anti-parallel
Strand 6	A	169	172	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	319	first strand
Strand 2	A	592	599	anti-parallel
Strand 3	A	609	613	anti-parallel
Strand 4	A	648	651	anti-parallel
Strand 5	A	642	645	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	328	first strand
Strand 2	A	538	543	parallel
Strand 3	A	546	554	anti-parallel
Strand 4	A	584	589	anti-parallel
Strand 5	A	573	577	anti-parallel
Strand 6	A	565	567	anti-parallel
Strand 7	B	42	43	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	358	first strand
Strand 2	A	394	403	anti-parallel
Strand 3	A	507	516	anti-parallel
Strand 4	A	431	437	anti-parallel
Strand 5	A	376	380	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	362	first strand
Strand 2	A	524	525	parallel
Strand 3	A	391	392	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	454	first strand
Strand 2	A	492	494	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	654	656	first strand
Strand 2	A	691	696	parallel
Strand 3	A	670	675	anti-parallel
Strand 4	A	664	667	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	702	704	first strand
Strand 2	B	788	790	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	711	722	first strand
Strand 2	A	1059	1076	anti-parallel
Strand 3	A	725	728	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	711	722	first strand
Strand 2	A	1059	1076	anti-parallel
Strand 3	A	1047	1056	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	789	790	first strand
Strand 2	C	703	704	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1120	1125	first strand
Strand 2	A	1086	1090	anti-parallel
Strand 3	A	1081	1082	anti-parallel
Strand 4	A	1133	1134	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1094	1097	first strand
Strand 2	A	1102	1105	anti-parallel
Strand 3	A	1113	1114	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	30	first strand
Strand 2	B	61	66	anti-parallel
Strand 3	B	264	269	anti-parallel
Strand 4	B	89	95	anti-parallel
Strand 5	B	188	195	anti-parallel
Strand 6	B	201	209	anti-parallel
Strand 7	B	222	229	anti-parallel
Strand 8	B	36	37	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	55	first strand
Strand 2	B	271	279	anti-parallel
Strand 3	B	285	290	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	85	first strand
Strand 2	B	237	244	anti-parallel
Strand 3	B	140	142	parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	85	first strand
Strand 2	B	237	244	anti-parallel
Strand 3	B	101	107	anti-parallel
Strand 4	B	117	122	anti-parallel
Strand 5	B	125	129	anti-parallel
Strand 6	B	169	172	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	319	first strand
Strand 2	B	592	599	anti-parallel
Strand 3	B	609	613	anti-parallel
Strand 4	B	648	651	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	328	first strand
Strand 2	B	538	543	parallel
Strand 3	B	546	554	anti-parallel
Strand 4	B	584	588	anti-parallel
Strand 5	B	573	577	anti-parallel
Strand 6	B	565	567	anti-parallel
Strand 7	C	42	44	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	334	335	first strand
Strand 2	B	361	362	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	377	379	first strand
Strand 2	B	432	436	anti-parallel
Strand 3	B	508	513	anti-parallel
Strand 4	B	400	402	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	654	656	first strand
Strand 2	B	691	696	parallel
Strand 3	B	670	675	anti-parallel
Strand 4	B	664	667	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	728	first strand
Strand 2	B	1059	1076	anti-parallel
Strand 3	B	1047	1056	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	734	736	first strand
Strand 2	B	858	860	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1086	1090	first strand
Strand 2	B	1120	1125	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1094	1097	first strand
Strand 2	B	1102	1106	anti-parallel
Strand 3	B	1109	1113	anti-parallel

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There are 8 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	30	first strand
Strand 2	C	61	65	anti-parallel
Strand 3	C	265	269	anti-parallel
Strand 4	C	89	96	anti-parallel
Strand 5	C	188	195	anti-parallel
Strand 6	C	201	209	anti-parallel
Strand 7	C	222	229	anti-parallel
Strand 8	C	36	37	parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	55	first strand
Strand 2	C	271	279	anti-parallel
Strand 3	C	285	290	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	85	first strand
Strand 2	C	237	244	anti-parallel
Strand 3	C	140	142	parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	85	first strand
Strand 2	C	237	244	anti-parallel
Strand 3	C	103	107	anti-parallel
Strand 4	C	116	120	anti-parallel
Strand 5	C	127	131	anti-parallel
Strand 6	C	166	171	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	311	319	first strand
Strand 2	C	592	599	anti-parallel
Strand 3	C	609	613	anti-parallel
Strand 4	C	648	651	anti-parallel
Strand 5	C	642	644	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	357	358	first strand
Strand 2	C	395	396	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	376	379	first strand
Strand 2	C	432	437	anti-parallel
Strand 3	C	507	513	anti-parallel
Strand 4	C	399	403	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	654	656	first strand
Strand 2	C	691	696	parallel
Strand 3	C	670	675	anti-parallel
Strand 4	C	664	667	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	711	728	first strand
Strand 2	C	1059	1078	anti-parallel
Strand 3	C	1047	1056	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	711	728	first strand
Strand 2	C	1059	1078	anti-parallel
Strand 3	C	1095	1097	anti-parallel
Strand 4	C	1102	1104	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	733	736	first strand
Strand 2	C	858	861	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1120	1125	first strand
Strand 2	C	1086	1090	anti-parallel
Strand 3	C	1081	1082	anti-parallel
Strand 4	C	1133	1134	parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	38	42	first strand
Strand 2	S	97	101	anti-parallel
Strand 3	S	88	91	anti-parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	77	79	first strand
Strand 2	S	64	70	anti-parallel
Strand 3	S	52	58	anti-parallel
Strand 4	S	112	118	anti-parallel
Strand 5	S	136	137	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	149	153	first strand
Strand 2	S	164	174	anti-parallel
Strand 3	S	205	214	anti-parallel
Strand 4	S	193	194	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	160	161	first strand
Strand 2	S	164	174	anti-parallel
Strand 3	S	205	214	anti-parallel
Strand 4	S	198	199	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	182	183	first strand
Strand 2	S	224	229	anti-parallel
Strand 3	S	234	239	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	29	32	first strand
Strand 2	T	122	125	parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	65	68	first strand
Strand 2	T	51	58	anti-parallel
Strand 3	T	105	111	anti-parallel
Strand 4	T	117	118	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	133	137	first strand
Strand 2	T	148	158	anti-parallel
Strand 3	T	192	201	anti-parallel
Strand 4	T	178	182	anti-parallel

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There are 3 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	172	174	first strand
Strand 2	T	164	169	anti-parallel
Strand 3	T	213	216	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7LJR

Analysis of interatomic Contacts of Structural Units in PDB entry:
7LJR