Analysis of interatomic Contacts of Structural Units in PDB entry:
7LK7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7LK7 entry

There is 1 chain in PDB entry 7LK7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 36LYS 597
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 7LK7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 52Right-handed alpha
Helix 2
AA2
A
55 62Right-handed alpha
Helix 3
AA3
A
70 74Right-handed 310
Helix 4
AA4
A
81 86Right-handed alpha
Helix 5
AA5
A
91 101Right-handed alpha
Helix 6
AA6
A
108 116Right-handed 310
Helix 7
AA7
A
122 133Right-handed alpha
Helix 8
AA8
A
168 181Right-handed alpha
Helix 9
AA9
A
190 195Right-handed 310
Helix 10
AB1
A
197 202Right-handed 310
Helix 11
AB2
A
205 209Right-handed 310
Helix 12
AB3
A
212 216Right-handed 310
Helix 13
AB4
A
238 257Right-handed alpha
Helix 14
AB5
A
265 271Right-handed 310
Helix 15
AB6
A
272 291Right-handed alpha
Helix 16
AB7
A
345 359Right-handed alpha
Helix 17
AB8
A
376 394Right-handed alpha
Helix 18
AB9
A
395 397Right-handed 310
Helix 19
AC1
A
455 460Right-handed 310
Back to top of page

There are 5 sheets in PDB entry 7LK7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 67first strand
Strand 2
A
137 143parallel
Strand 3
A
183 188parallel
Strand 4
A
260 263parallel
Strand 5
A
295 298parallel
Strand 6
A
308 312parallel
Strand 7
A
324 329parallel
Strand 8
A
361 367parallel
Strand 9
A
63 67parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
407 408first strand
Strand 2
A
431 436anti-parallel
Strand 3
A
439 444anti-parallel
Strand 4
A
502 513anti-parallel
Strand 5
A
524 533anti-parallel
Strand 6
A
517 521anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
462 472first strand
Strand 2
A
502 513anti-parallel
Strand 3
A
524 533anti-parallel
Strand 4
A
562 571anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
451 454first strand
Strand 2
A
487 491anti-parallel
Strand 3
A
481 484anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
550 558first strand
Strand 2
A
539 547anti-parallel
Strand 3
A
581 585anti-parallel
Strand 4
A
588 592anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il